-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_8946238-9159240

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_27649-T1
Valid prediction for GlimmerHMM_glimmerT_27623-T1
Valid prediction for snap_scaffold_11-snap.2033-T1
Valid prediction for GlimmerHMM_glimmerT_27648-T1
Valid prediction for CodingQuarry_transcript_8197-T1
Valid prediction for HiQ_model.g18303.t1
Valid prediction for GlimmerHMM_glimmerT_27629-T1
Valid prediction for GlimmerHMM_glimmerT_27628-T1
Valid prediction for CodingQuarry_transcript_8201-T1
Valid prediction for snap_scaffold_11-snap.2023-T1
Valid prediction for snap_scaffold_11-snap.2031-T1
Valid prediction for snap_scaffold_11-snap.2054-T1
Valid prediction for CodingQuarry_transcript_8199-T1
Valid prediction for GlimmerHMM_glimmerT_27635-T1
Valid prediction for pasa_asmbl_5852.p1
Valid prediction for Augustus_model.g18287.t1
Valid prediction for snap_scaffold_11-snap.2059-T1
Valid prediction for HiQ_model.g18290.t1
Valid prediction for CodingQuarry_transcript_8204-T1
Valid prediction for snap_scaffold_11-snap.2063-T1
Valid prediction for snap_scaffold_11-snap.2066-T1
Valid prediction for GlimmerHMM_glimmerT_27625-T1
Valid prediction for HiQ_model.g18293.t1
Valid prediction for snap_scaffold_11-snap.2035-T1
Couldn't classify 136099, 136293
Sorry, prediction pasa_asmbl_5859.p1 fails validation.
(ATG)	 AC	135215-135298	GT	AGG
(GTG)	 AG	135550-135906	GT	AGG
(GAA)	 AG	136099-136293	GC	GGG
-recovered pasa_asmbl_5859.p1, initial, 135215, 135298
-recovered pasa_asmbl_5859.p1, internal, 135550, 135906
-recovered pasa_asmbl_5859.p1, internal, 136099, 136293
Couldn't classify 132663, 132748
Couldn't classify 134283, 134382
Sorry, prediction pasa_asmbl_5857.p1 fails validation.
(TTA)	 TG	132663-132748	GT	AAG
(GGA)	 AG	133039-133130	GT	TAG
(GTC)	 AG	133564-133805	GT	AGG
(GTG)	 AG	133944-134119	GT	AGG
(TGT)	 AG	134283-134382	GG	TGG
-recovered pasa_asmbl_5857.p1, terminal, 133944, 134119
-recovered pasa_asmbl_5857.p1, internal, 133039, 133130
-recovered pasa_asmbl_5857.p1, internal, 133564, 133805
-recovered pasa_asmbl_5857.p1, internal, 133944, 134119
Valid prediction for HiQ_model.g18286.t1
Valid prediction for GlimmerHMM_glimmerT_27632-T1
Valid prediction for GlimmerHMM_glimmerT_27646-T1
Valid prediction for GlimmerHMM_glimmerT_27645-T1
Valid prediction for snap_scaffold_11-snap.2055-T1
Valid prediction for snap_scaffold_11-snap.2041-T1
Valid prediction for GlimmerHMM_glimmerT_27636-T1
Valid prediction for pasa_asmbl_5873.p1
Valid prediction for snap_scaffold_11-snap.2021-T1
Couldn't classify 116746, 116845
Sorry, prediction pasa_asmbl_5854.p1 fails validation.
(ATG)	 CA	115781-116214	GT	GGG
(GTC)	 AG	116431-116544	GT	AGG
(GTT)	 AG	116746-116845	CA	GCC
-recovered pasa_asmbl_5854.p1, initial, 115781, 116214
-recovered pasa_asmbl_5854.p1, internal, 116431, 116544
Valid prediction for snap_scaffold_11-snap.2029-T1
Valid prediction for pasa_asmbl_5848.p1
Valid prediction for snap_scaffold_11-snap.2053-T1
Valid prediction for HiQ_model.g18292.t1
Valid prediction for GlimmerHMM_glimmerT_27637-T1
Valid prediction for GlimmerHMM_glimmerT_27619-T1
Valid prediction for snap_scaffold_11-snap.2064-T1
Sorry, intron length (4) is less than minimum required (10)
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_27638-T1
Valid prediction for GlimmerHMM_glimmerT_27652-T1
Valid prediction for GlimmerHMM_glimmerT_27642-T1
Valid prediction for Augustus_model.g18298.t1
Valid prediction for snap_scaffold_11-snap.2050-T1
Valid prediction for snap_scaffold_11-snap.2044-T1
Valid prediction for Augustus_model.g18300.t1
Valid prediction for snap_scaffold_11-snap.2047-T1
Valid prediction for pasa_asmbl_5851.p1
Valid prediction for GlimmerHMM_glimmerT_27647-T1
Valid prediction for snap_scaffold_11-snap.2042-T1
Valid prediction for GlimmerHMM_glimmerT_27639-T1
Valid prediction for snap_scaffold_11-snap.2043-T1
Valid prediction for pasa_asmbl_5868.p1
Valid prediction for GlimmerHMM_glimmerT_27624-T1
Couldn't classify 140402, 140477
Couldn't classify 140658, 140765
Sorry, prediction CodingQuarry_transcript_8202-T1 fails validation.
(ATG)	 TC	140074-140082	GT	CTG
(AAT)	 AG	140402-140477	AG	CAA
(AGG)	 TT	140658-140765	GT	AGG
(TGC)	 AG	140937-141030	GT	AAG
(GTA)	 AG	141321-141369	GG	AGG
-recovered CodingQuarry_transcript_8202-T1, initial, 140074, 140082
-recovered CodingQuarry_transcript_8202-T1, terminal, 141321, 141369
-recovered CodingQuarry_transcript_8202-T1, internal, 140937, 141030
Valid prediction for Augustus_model.g18299.t1
Valid prediction for GlimmerHMM_glimmerT_27634-T1
Valid prediction for HiQ_model.g18305.t1
Couldn't classify 98997, 99221
Couldn't classify 99492, 99626
Sorry, prediction pasa_asmbl_6270.p1 fails validation.
(CTG)	 AA	98997-99221	GT	TGG
(GCC)	 AG	99492-99626	CA	AGC
Valid prediction for snap_scaffold_11-snap.2032-T1
Valid prediction for GlimmerHMM_glimmerT_27627-T1
Valid prediction for snap_scaffold_11-snap.2027-T1
Valid prediction for Augustus_model.g18291.t1
Valid prediction for snap_scaffold_11-snap.2057-T1
Couldn't classify 68159, 68203
Sorry, prediction pasa_asmbl_5849.p2 fails validation.
(CTG)	 AC	68159-68203	GT	AGG
(GGA)	 AG	68369-68447	GT	AGG
(GCT)	 AG	68654-68770	GT	CAG
(GGG)	 AG	68859-68917	GT	AGG
(TGG)	 AG	69008-69034	AT	AGA
-recovered pasa_asmbl_5849.p2, terminal, 69008, 69034
-recovered pasa_asmbl_5849.p2, internal, 68369, 68447
-recovered pasa_asmbl_5849.p2, internal, 68654, 68770
-recovered pasa_asmbl_5849.p2, internal, 68859, 68917
Valid prediction for CodingQuarry_transcript_8198-T1
Couldn't classify 149943, 150083
Couldn't classify 150317, 150520
Sorry, prediction pasa_asmbl_6343.p1 fails validation.
(TTT)	 AA	149943-150083	GT	TGG
(GTG)	 AG	150317-150520	CT	ACC
Valid prediction for GlimmerHMM_glimmerT_27626-T1
Valid prediction for Augustus_model.g18301.t1
Couldn't classify 136567, 137034
Sorry, prediction pasa_asmbl_5860.p1 fails validation.
(AGC)	 GT	136567-137034	AA	GAA
Valid prediction for pasa_asmbl_5850.p1
Valid prediction for snap_scaffold_11-snap.2045-T1
Valid prediction for Augustus_model.g18297.t1
Valid prediction for snap_scaffold_11-snap.2040-T1
Valid prediction for CodingQuarry_transcript_8200-T1
Valid prediction for snap_scaffold_11-snap.2051-T1
Valid prediction for HiQ_model.g18302.t1
Valid prediction for snap_scaffold_11-snap.2039-T1
Valid prediction for Augustus_model.g18295.t1
Valid prediction for snap_scaffold_11-snap.2056-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_27630-T1
Valid prediction for Augustus_model.g18294.t1
Valid prediction for GlimmerHMM_glimmerT_27621-T1
Valid prediction for GlimmerHMM_glimmerT_27643-T1
Valid prediction for GlimmerHMM_glimmerT_27650-T1
Valid prediction for GlimmerHMM_glimmerT_27622-T1
Valid prediction for snap_scaffold_11-snap.2062-T1
Valid prediction for snap_scaffold_11-snap.2052-T1
Couldn't classify 18568, 18856
Couldn't classify 19015, 19109
Sorry, prediction pasa_asmbl_7373.p1 fails validation.
(CTG)	 CC	18568-18856	GT	AGG
(CTG)	 AG	19015-19109	AC	ACA
Valid prediction for HiQ_model.g18285.t1
Valid prediction for snap_scaffold_11-snap.2028-T1
Valid prediction for GlimmerHMM_glimmerT_27631-T1
Valid prediction for pasa_asmbl_6898.p1
Valid prediction for GlimmerHMM_glimmerT_27620-T1
Valid prediction for GlimmerHMM_glimmerT_27641-T1
Valid prediction for snap_scaffold_11-snap.2034-T1
Valid prediction for snap_scaffold_11-snap.2037-T1
Valid prediction for GlimmerHMM_glimmerT_27618-T1
Valid prediction for HiQ_model.g18284.t1
Valid prediction for CodingQuarry_transcript_8195-T1
Couldn't classify 83130, 83448
Sorry, prediction pasa_asmbl_6908.p1 fails validation.
(GAA)	 TG	83130-83448	GT	GGG
(ACT)	 AG	84112-84221	GT	AGG
(TCT)	 AG	84447-84586	GT	AGG
(CTG)	 AG	84948-85032	GT	CGG
(ATA)	 AG	85420-85570	GT	AGG
(ATC)	 AG	85973-86058	GT	GGG
(CTG)	 AG	86285-86408	GT	GGG
(GAG)	 AG	87906-88102	GT	AGG
(GGC)	 AG	88308-88487	GT	TTG
(GTA)	 AG	89269-89563	GT	GAG
(GCA)	 AG	89870-90009	GT	AGG
(GTC)	 AG	90384-90486	GT	AGG
(CCG)	 AG	90783-91111	CC	GAC
-recovered pasa_asmbl_6908.p1, terminal, 90783, 91111
-recovered pasa_asmbl_6908.p1, internal, 84112, 84221
-recovered pasa_asmbl_6908.p1, internal, 84447, 84586
-recovered pasa_asmbl_6908.p1, internal, 84948, 85032
-recovered pasa_asmbl_6908.p1, internal, 85420, 85570
-recovered pasa_asmbl_6908.p1, internal, 85973, 86058
-recovered pasa_asmbl_6908.p1, internal, 86285, 86408
-recovered pasa_asmbl_6908.p1, internal, 87906, 88102
-recovered pasa_asmbl_6908.p1, internal, 88308, 88487
-recovered pasa_asmbl_6908.p1, internal, 89269, 89563
-recovered pasa_asmbl_6908.p1, internal, 89870, 90009
-recovered pasa_asmbl_6908.p1, internal, 90384, 90486
Valid prediction for snap_scaffold_11-snap.2061-T1
Valid prediction for HiQ_model.g18288.t1
Valid prediction for snap_scaffold_11-snap.2049-T1
Valid prediction for Augustus_model.g18283.t1
Couldn't classify 20786, 21133
Sorry, prediction pasa_asmbl_6917.p2 fails validation.
(AGA)	 GG	20786-21133	AG	GCA
Valid prediction for snap_scaffold_11-snap.2030-T1
Valid prediction for GlimmerHMM_glimmerT_27617-T1
Valid prediction for snap_scaffold_11-snap.2024-T1
Valid prediction for snap_scaffold_11-snap.2038-T1
Couldn't classify 167047, 167120
Couldn't classify 167326, 167432
Sorry, prediction CodingQuarry_transcript_8196-T1 fails validation.
(ATG)	 TC	163167-163173	GT	GTG
(TTC)	 AG	163544-163641	GT	CCG
(GAC)	 AG	163936-164052	GT	AGG
(GTT)	 AG	164658-164705	GT	CAG
(AGA)	 AG	164811-164867	GT	CAG
(GAA)	 AG	165237-165387	GT	AAG
(TGA)	 AG	165540-165601	GT	TGG
(TTC)	 AG	165953-166136	GT	CGG
(TCC)	 AG	166321-166420	GT	AAG
(GCC)	 AG	166846-166939	GT	GCG
(GGT)	 AG	167047-167120	AT	ATA
(TTT)	 AT	167326-167432	GT	GGG
(CTT)	 AG	167700-167758	GT	CGG
(GGT)	 AG	168041-168144	GT	AGG
(GTT)	 AG	168549-168625	GT	CGG
(AGG)	 AG	168713-168777	GT	AGG
(GAT)	 AG	168936-168988	GT	GTG
(AGC)	 AG	169180-169210	GT	AGG
(GAA)	 AG	169354-169395	AA	AAA
-recovered CodingQuarry_transcript_8196-T1, initial, 163167, 163173
-recovered CodingQuarry_transcript_8196-T1, terminal, 169354, 169395
-recovered CodingQuarry_transcript_8196-T1, internal, 163544, 163641
-recovered CodingQuarry_transcript_8196-T1, internal, 163936, 164052
-recovered CodingQuarry_transcript_8196-T1, internal, 164658, 164705
-recovered CodingQuarry_transcript_8196-T1, internal, 164811, 164867
-recovered CodingQuarry_transcript_8196-T1, internal, 165237, 165387
-recovered CodingQuarry_transcript_8196-T1, internal, 165540, 165601
-recovered CodingQuarry_transcript_8196-T1, internal, 165953, 166136
-recovered CodingQuarry_transcript_8196-T1, internal, 166321, 166420
-recovered CodingQuarry_transcript_8196-T1, internal, 166846, 166939
-recovered CodingQuarry_transcript_8196-T1, internal, 167700, 167758
-recovered CodingQuarry_transcript_8196-T1, internal, 168041, 168144
-recovered CodingQuarry_transcript_8196-T1, internal, 168549, 168625
-recovered CodingQuarry_transcript_8196-T1, internal, 168713, 168777
-recovered CodingQuarry_transcript_8196-T1, internal, 168936, 168988
-recovered CodingQuarry_transcript_8196-T1, internal, 169180, 169210
Valid prediction for Augustus_model.g18304.t1
Couldn't classify 201054, 201130
Couldn't classify 203840, 203956
Sorry, prediction pasa_asmbl_7332.p1 fails validation.
(TGC)	 CC	201054-201130	GT	AAG
(GAA)	 AG	201385-201477	GT	AGG
(CAT)	 AG	202745-202828	GT	CGG
(GAT)	 AG	203346-203472	GT	AGG
(AGA)	 AG	203840-203956	GT	AGG
-recovered pasa_asmbl_7332.p1, internal, 201385, 201477
-recovered pasa_asmbl_7332.p1, internal, 202745, 202828
-recovered pasa_asmbl_7332.p1, internal, 203346, 203472
-recovered pasa_asmbl_7332.p1, internal, 203840, 203956
Valid prediction for Augustus_model.g18289.t1
Valid prediction for HiQ_model.g18296.t1
Valid prediction for snap_scaffold_11-snap.2046-T1
Valid prediction for snap_scaffold_11-snap.2065-T1
Couldn't classify 141189, 141236
Sorry, prediction pasa_asmbl_6905.p1 fails validation.
(ATG)	 GC	130679-130944	GT	AGG
(ACT)	 AG	131955-134033	GT	AGG
(GTT)	 AG	134374-134887	GT	GGG
(GAC)	 AG	135000-135069	GT	AGG
(AGC)	 AG	135205-135359	GT	AGG
(GTA)	 AG	135664-135724	GT	AGG
(GCG)	 AG	136069-136371	GT	AGG
(GTC)	 AG	136514-137285	GT	AGG
(AGA)	 AG	137748-137797	GT	AGG
(CGG)	 AG	138163-138311	GT	TGG
(AGC)	 AG	138617-138751	GT	AGG
(ACG)	 AG	138873-138989	GT	AGG
(ACC)	 AG	139159-139350	GT	AGG
(GTG)	 AG	139483-139545	GT	ATG
(ACC)	 AG	139889-140008	GT	AGG
(TCC)	 AG	140456-140527	GT	TGG
(ATC)	 AG	140615-140686	GT	TGG
(TGG)	 AG	140896-141042	GT	AGG
(AGC)	 AG	141189-141236	AA	AGA
-recovered pasa_asmbl_6905.p1, initial, 130679, 130944
-recovered pasa_asmbl_6905.p1, internal, 131955, 134033
-recovered pasa_asmbl_6905.p1, internal, 134374, 134887
-recovered pasa_asmbl_6905.p1, internal, 135000, 135069
-recovered pasa_asmbl_6905.p1, internal, 135205, 135359
-recovered pasa_asmbl_6905.p1, internal, 135664, 135724
-recovered pasa_asmbl_6905.p1, internal, 136069, 136371
-recovered pasa_asmbl_6905.p1, internal, 136514, 137285
-recovered pasa_asmbl_6905.p1, internal, 137748, 137797
-recovered pasa_asmbl_6905.p1, internal, 138163, 138311
-recovered pasa_asmbl_6905.p1, internal, 138617, 138751
-recovered pasa_asmbl_6905.p1, internal, 138873, 138989
-recovered pasa_asmbl_6905.p1, internal, 139159, 139350
-recovered pasa_asmbl_6905.p1, internal, 139483, 139545
-recovered pasa_asmbl_6905.p1, internal, 139889, 140008
-recovered pasa_asmbl_6905.p1, internal, 140456, 140527
-recovered pasa_asmbl_6905.p1, internal, 140615, 140686
-recovered pasa_asmbl_6905.p1, internal, 140896, 141042
Valid prediction for CodingQuarry_transcript_8194-T1
Valid prediction for snap_scaffold_11-snap.2036-T1
Valid prediction for GlimmerHMM_glimmerT_27633-T1
Valid prediction for snap_scaffold_11-snap.2060-T1
Valid prediction for GlimmerHMM_glimmerT_27644-T1
Valid prediction for snap_scaffold_11-snap.2048-T1
Valid prediction for GlimmerHMM_glimmerT_27616-T1
Couldn't classify 22620, 22868
Sorry, prediction pasa_asmbl_6915.p1 fails validation.
(GGT)	 CA	22620-22868	GT	TGG
(GAG)	 AG	22981-23146	GT	AGG
(GTC)	 AG	23233-23290	GT	CAG
(GAT)	 AG	23684-23783	GT	AGG
(ACA)	 AG	24040-24084	TG	GAT
-recovered pasa_asmbl_6915.p1, terminal, 24040, 24084
-recovered pasa_asmbl_6915.p1, internal, 22981, 23146
-recovered pasa_asmbl_6915.p1, internal, 23233, 23290
-recovered pasa_asmbl_6915.p1, internal, 23684, 23783
Valid prediction for snap_scaffold_11-snap.2022-T1
Valid prediction for snap_scaffold_11-snap.2025-T1
Valid prediction for GlimmerHMM_glimmerT_27640-T1
Valid prediction for snap_scaffold_11-snap.2026-T1
Valid prediction for GlimmerHMM_glimmerT_27651-T1
Valid prediction for snap_scaffold_11-snap.2058-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7967, rend_intergenic: 7068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21639, rend_intergenic: 11463  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42343, rend_intergenic: 31606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57794, rend_intergenic: 52093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66241, rend_intergenic: 65077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69321, rend_intergenic: 66784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122641, rend_intergenic: 118923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142185, rend_intergenic: 140184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169088, rend_intergenic: 168095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170028, rend_intergenic: 169330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186760, rend_intergenic: 172011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197184, rend_intergenic: 188530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 69034, rend_intergenic: 69031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 213003
-exon list size: 674


building trellis

0.1    
0.3    
0.4    
0.6    
0.7    
0.9    
1.0    
1.2    
1.3    
1.5    
1.6    
1.8    
1.9    
2.1    
2.2    
2.4    
2.5    
2.7    
2.8    
3.0    
3.1    
3.3    
3.4    
3.6    
3.7    
3.8    
4.0    
4.1    
4.3    
4.4    
4.6    
4.7    
4.9    
5.0    
5.2    
5.3    
5.5    
5.6    
5.8    
5.9    
6.1    
6.2    
6.4    
6.5    
6.7    
6.8    
7.0    
7.1    
7.2    
7.4    
7.5    
7.7    
7.8    
8.0    
8.1    
8.3    
8.4    
8.6    
8.7    
8.9    
9.0    
9.2    
9.3    
9.5    
9.6    
9.8    
9.9    
10.1    
10.2    
10.4    
10.5    
10.7    
10.8    
10.9    
11.1    
11.2    
11.4    
11.5    
11.7    
11.8    
12.0    
12.1    
12.3    
12.4    
12.6    
12.7    
12.9    
13.0    
13.2    
13.3    
13.5    
13.6    
13.8    
13.9    
14.1    
14.2    
14.3    
14.5    
14.6    
14.8    
14.9    
15.1    
15.2    
15.4    
15.5    
15.7    
15.8    
16.0    
16.1    
16.3    
16.4    
16.6    
16.7    
16.9    
17.0    
17.2    
17.3    
17.5    
17.6    
17.8    
17.9    
18.0    
18.2    
18.3    
18.5    
18.6    
18.8    
18.9    
19.1    
19.2    
19.4    
19.5    
19.7    
19.8    
20.0    
20.1    
20.3    
20.4    
20.6    
20.7    
20.9    
21.0    
21.2    
21.3    
21.4    
21.6    
21.7    
21.9    
22.0    
22.2    
22.3    
22.5    
22.6    
22.8    
22.9    
23.1    
23.2    
23.4    
23.5    
23.7    
23.8    
24.0    
24.1    
24.3    
24.4    
24.6    
24.7    
24.9    
25.0    
25.1    
25.3    
25.4    
25.6    
25.7    
25.9    
26.0    
26.2    
26.3    
26.5    
26.6    
26.8    
26.9    
27.1    
27.2    
27.4    
27.5    
27.7    
27.8    
28.0    
28.1    
28.3    
28.4    
28.6    
28.7    
28.8    
29.0    
29.1    
29.3    
29.4    
29.6    
29.7    
29.9    
30.0    
30.2    
30.3    
30.5    
30.6    
30.8    
30.9    
31.1    
31.2    
31.4    
31.5    
31.7    
31.8    
32.0    
32.1    
32.2    
32.4    
32.5    
32.7    
32.8    
33.0    
33.1    
33.3    
33.4    
33.6    
33.7    
33.9    
34.0    
34.2    
34.3    
34.5    
34.6    
34.8    
34.9    
35.1    
35.2    
35.4    
35.5    
35.7    
35.8    
35.9    
36.1    
36.2    
36.4    
36.5    
36.7    
36.8    
37.0    
37.1    
37.3    
37.4    
37.6    
37.7    
37.9    
38.0    
38.2    
38.3    
38.5    
38.6    
38.8    
38.9    
39.1    
39.2    
39.3    
39.5    
39.6    
39.8    
39.9    
40.1    
40.2    
40.4    
40.5    
40.7    
40.8    
41.0    
41.1    
41.3    
41.4    
41.6    
41.7    
41.9    
42.0    
42.2    
42.3    
42.5    
42.6    
42.8    
42.9    
43.0    
43.2    
43.3    
43.5    
43.6    
43.8    
43.9    
44.1    
44.2    
44.4    
44.5    
44.7    
44.8    
45.0    
45.1    
45.3    
45.4    
45.6    
45.7    
45.9    
46.0    
46.2    
46.3    
46.4    
46.6    
46.7    
46.9    
47.0    
47.2    
47.3    
47.5    
47.6    
47.8    
47.9    
48.1    
48.2    
48.4    
48.5    
48.7    
48.8    
49.0    
49.1    
49.3    
49.4    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.6    
50.7    
50.9    
51.0    
51.2    
51.3    
51.5    
51.6    
51.8    
51.9    
52.1    
52.2    
52.4    
52.5    
52.7    
52.8    
53.0    
53.1    
53.3    
53.4    
53.6    
53.7    
53.8    
54.0    
54.1    
54.3    
54.4    
54.6    
54.7    
54.9    
55.0    
55.2    
55.3    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.4    
56.5    
56.7    
56.8    
57.0    
57.1    
57.2    
57.4    
57.5    
57.7    
57.8    
58.0    
58.1    
58.3    
58.4    
58.6    
58.7    
58.9    
59.0    
59.2    
59.3    
59.5    
59.6    
59.8    
59.9    
60.1    
60.2    
60.4    
60.5    
60.7    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.7    
61.8    
62.0    
62.1    
62.3    
62.4    
62.6    
62.7    
62.9    
63.0    
63.2    
63.3    
63.5    
63.6    
63.8    
63.9    
64.1    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.1    
65.2    
65.4    
65.5    
65.7    
65.8    
66.0    
66.1    
66.3    
66.4    
66.6    
66.7    
66.9    
67.0    
67.2    
67.3    
67.5    
67.6    
67.8    
67.9    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.5    
69.7    
69.8    
70.0    
70.1    
70.3    
70.4    
70.6    
70.7    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.9    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.2    
73.4    
73.5    
73.7    
73.8    
74.0    
74.1    
74.3    
74.4    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.9    
76.0    
76.2    
76.3    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.3    
78.4    
78.6    
78.7    
78.8    
79.0    
79.1    
79.3    
79.4    
79.6    
79.7    
79.9    
80.0    
80.2    
80.3    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.1    
82.2    
82.4    
82.5    
82.7    
82.8    
83.0    
83.1    
83.3    
83.4    
83.6    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.8    
84.9    
85.1    
85.2    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.4    
86.5    
86.7    
86.8    
87.0    
87.1    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.3    
89.5    
89.6    
89.8    
89.9    
90.1    
90.2    
90.4    
90.5    
90.7    
90.8    
91.0    
91.1    
91.3    
91.4    
91.6    
91.7    
91.9    
92.0    
92.2    
92.3    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.0    
96.2    
96.3    
96.4    
96.6    
96.7    
96.9    
97.0    
97.2    
97.3    
97.5    
97.6    
97.8    
97.9    
98.1    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 7967, rend_intergenic: 7068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21639, rend_intergenic: 11463  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42343, rend_intergenic: 31606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57794, rend_intergenic: 52093  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66241, rend_intergenic: 65077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69321, rend_intergenic: 66784  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122641, rend_intergenic: 118923  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142185, rend_intergenic: 140184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169088, rend_intergenic: 168095  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170028, rend_intergenic: 169330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186760, rend_intergenic: 172011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197184, rend_intergenic: 188530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 69034, rend_intergenic: 69031  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support