-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_4729437-4967025

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_27050-T1
Valid prediction for GlimmerHMM_glimmerT_27045-T1
Valid prediction for snap_scaffold_11-snap.1154-T1
Couldn't classify 90842, 91028
Couldn't classify 91140, 91204
Sorry, prediction CodingQuarry_transcript_8057-T1 fails validation.
(ATG)	 AA	89712-89850	GT	AGG
(AGA)	 AG	89969-90059	GT	CAG
(GCT)	 AG	90154-90281	GT	AGG
(GGA)	 AG	90411-90490	GT	AGG
(AGT)	 AG	90842-91028	AT	TGA
(GTC)	 AC	91140-91204	GT	AGG
(GCA)	 AG	91373-91409	GT	AGG
(CTC)	 AG	91609-91738	GT	AGG
(TGC)	 AG	91963-92080	AA	GAA
-recovered CodingQuarry_transcript_8057-T1, initial, 89712, 89850
-recovered CodingQuarry_transcript_8057-T1, terminal, 91963, 92080
-recovered CodingQuarry_transcript_8057-T1, internal, 89969, 90059
-recovered CodingQuarry_transcript_8057-T1, internal, 90154, 90281
-recovered CodingQuarry_transcript_8057-T1, internal, 90411, 90490
-recovered CodingQuarry_transcript_8057-T1, internal, 91373, 91409
-recovered CodingQuarry_transcript_8057-T1, internal, 91609, 91738
Valid prediction for CodingQuarry_transcript_8052-T1
Valid prediction for snap_scaffold_11-snap.1165-T1
Valid prediction for HiQ_model.g17887.t1
Valid prediction for HiQ_model.g17878.t1
Valid prediction for snap_scaffold_11-snap.1179-T1
Valid prediction for HiQ_model.g17876.t1
Valid prediction for GlimmerHMM_glimmerT_27041-T1
Valid prediction for GlimmerHMM_glimmerT_27047-T1
Couldn't classify 90842, 91028
Couldn't classify 91140, 91204
Sorry, prediction pasa_asmbl_5524.p1 fails validation.
(ATG)	 AA	89712-89850	GT	AGG
(AGA)	 AG	89969-90059	GT	CAG
(GCT)	 AG	90154-90281	GT	AGG
(GGA)	 AG	90411-90490	GT	AGG
(AGT)	 AG	90842-91028	AT	TGA
(GTC)	 AC	91140-91204	GT	AGG
(GCA)	 AG	91373-91409	GT	AGG
(CTC)	 AG	91609-91738	GT	AGG
(TGC)	 AG	91963-92080	AA	GAA
-recovered pasa_asmbl_5524.p1, initial, 89712, 89850
-recovered pasa_asmbl_5524.p1, terminal, 91963, 92080
-recovered pasa_asmbl_5524.p1, internal, 89969, 90059
-recovered pasa_asmbl_5524.p1, internal, 90154, 90281
-recovered pasa_asmbl_5524.p1, internal, 90411, 90490
-recovered pasa_asmbl_5524.p1, internal, 91373, 91409
-recovered pasa_asmbl_5524.p1, internal, 91609, 91738
Valid prediction for snap_scaffold_11-snap.1183-T1
Valid prediction for snap_scaffold_11-snap.1189-T1
Couldn't classify 102161, 102244
Couldn't classify 107931, 108031
Sorry, prediction pasa_asmbl_5526.p1 fails validation.
(TGT)	 AG	102161-102244	GT	AGG
(TCT)	 AG	102403-102507	GT	GGG
(TTA)	 AG	102847-102964	GT	TGG
(CAT)	 AG	103148-103205	GT	AGG
(GGC)	 AG	103303-103375	GT	AGG
(ATC)	 AG	103583-103743	GT	ATG
(TCT)	 AG	104627-104743	GT	AGG
(TGA)	 AG	106878-106975	GT	AGG
(CCT)	 AG	107931-108031	CA	CCC
-recovered pasa_asmbl_5526.p1, internal, 102161, 102244
-recovered pasa_asmbl_5526.p1, internal, 102403, 102507
-recovered pasa_asmbl_5526.p1, internal, 102847, 102964
-recovered pasa_asmbl_5526.p1, internal, 103148, 103205
-recovered pasa_asmbl_5526.p1, internal, 103303, 103375
-recovered pasa_asmbl_5526.p1, internal, 103583, 103743
-recovered pasa_asmbl_5526.p1, internal, 104627, 104743
-recovered pasa_asmbl_5526.p1, internal, 106878, 106975
Valid prediction for snap_scaffold_11-snap.1167-T1
Valid prediction for pasa_asmbl_5508.p1
Valid prediction for snap_scaffold_11-snap.1169-T1
Valid prediction for HiQ_model.g17886.t1
Valid prediction for snap_scaffold_11-snap.1185-T1
Valid prediction for Augustus_model.g17891.t1
Valid prediction for Augustus_model.g17888.t1
Valid prediction for Augustus_model.g17882.t1
Valid prediction for HiQ_model.g17879.t1
Valid prediction for snap_scaffold_11-snap.1164-T1
Valid prediction for GlimmerHMM_glimmerT_27036-T1
Valid prediction for GlimmerHMM_glimmerT_27046-T1
Valid prediction for snap_scaffold_11-snap.1182-T1
Couldn't classify 18516, 18769
Couldn't classify 19160, 19292
Sorry, prediction pasa_asmbl_5513.p2 fails validation.
(CGG)	 CC	18516-18769	GT	AGG
(TCT)	 AG	18902-18949	GT	AGG
(GGG)	 AG	19160-19292	GT	AGG
-recovered pasa_asmbl_5513.p2, internal, 18902, 18949
-recovered pasa_asmbl_5513.p2, internal, 19160, 19292
Valid prediction for pasa_asmbl_5518.p1
Valid prediction for GlimmerHMM_glimmerT_27042-T1
Valid prediction for snap_scaffold_11-snap.1188-T1
Couldn't classify 93325, 93463
Couldn't classify 100984, 101127
Sorry, prediction pasa_asmbl_5525.p1 fails validation.
(TGG)	 TG	93325-93463	GT	CGG
(ATG)	 AG	94387-94541	GT	AGG
(CCA)	 AG	94663-94831	GT	AGG
(GTC)	 AG	97536-97669	GT	AGG
(GCC)	 AG	98792-98913	GT	GGG
(CAA)	 AG	100659-100737	GT	TGG
(ACC)	 AG	100984-101127	AG	TCA
add_exon() Sorry, pasa_asmbl_5525.p1 94387-94541-initial-1 is invalid.
-recovered pasa_asmbl_5525.p1, initial, 94387, 94541
-recovered pasa_asmbl_5525.p1, internal, 94387, 94541
-recovered pasa_asmbl_5525.p1, internal, 94663, 94831
-recovered pasa_asmbl_5525.p1, internal, 97536, 97669
-recovered pasa_asmbl_5525.p1, internal, 98792, 98913
-recovered pasa_asmbl_5525.p1, internal, 100659, 100737
Valid prediction for CodingQuarry_transcript_8055-T1
Couldn't classify 17787, 18296
Sorry, prediction pasa_asmbl_5511.p1 fails validation.
(ATG)	 AT	17787-18296	AC	GTA
Valid prediction for GlimmerHMM_glimmerT_27040-T1
Valid prediction for CodingQuarry_transcript_8053-T1
Valid prediction for snap_scaffold_11-snap.1175-T1
Valid prediction for snap_scaffold_11-snap.1168-T1
Valid prediction for GlimmerHMM_glimmerT_27056-T1
Valid prediction for GlimmerHMM_glimmerT_27038-T1
Valid prediction for snap_scaffold_11-snap.1152-T1
Valid prediction for HiQ_model.g17880.t1
Couldn't classify 108110, 108167
Sorry, prediction pasa_asmbl_5529.p1 fails validation.
(AGC)	 CA	108110-108167	GT	CAG
(GCT)	 AG	110820-110960	GT	AGG
(CGG)	 AG	112000-112202	GT	TGG
(GGT)	 AG	112775-112996	TC	GAT
-recovered pasa_asmbl_5529.p1, terminal, 112775, 112996
-recovered pasa_asmbl_5529.p1, internal, 110820, 110960
-recovered pasa_asmbl_5529.p1, internal, 112000, 112202
Valid prediction for GlimmerHMM_glimmerT_27034-T1
Valid prediction for Augustus_model.g17895.t1
Valid prediction for CodingQuarry_transcript_8050-T1
Valid prediction for snap_scaffold_11-snap.1191-T1
Valid prediction for snap_scaffold_11-snap.1177-T1
Valid prediction for snap_scaffold_11-snap.1156-T1
Valid prediction for snap_scaffold_11-snap.1193-T1
Valid prediction for pasa_asmbl_5514.p1
Valid prediction for snap_scaffold_11-snap.1161-T1
Valid prediction for snap_scaffold_11-snap.1158-T1
Couldn't classify 130059, 130131
Couldn't classify 133411, 133422
Sorry, prediction pasa_asmbl_5530.p1 fails validation.
(TGC)	 CA	130059-130131	GT	AGG
(AGC)	 AG	131349-131457	GT	AGG
(ACT)	 AG	131775-131966	GT	CGG
(TCA)	 AG	132431-132580	GT	AGG
(GTA)	 AG	132755-133232	GT	AGG
(GAT)	 AG	133411-133422	GA	GGG
-recovered pasa_asmbl_5530.p1, internal, 131349, 131457
-recovered pasa_asmbl_5530.p1, internal, 131775, 131966
-recovered pasa_asmbl_5530.p1, internal, 132431, 132580
-recovered pasa_asmbl_5530.p1, internal, 132755, 133232
Valid prediction for snap_scaffold_11-snap.1163-T1
Valid prediction for pasa_asmbl_5532.p1
Valid prediction for Augustus_model.g17896.t1
Valid prediction for snap_scaffold_11-snap.1159-T1
Valid prediction for Augustus_model.g17898.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.1166-T1
Valid prediction for CodingQuarry_transcript_8059-T1
Couldn't classify 177068, 177114
Couldn't classify 181190, 181315
Sorry, prediction pasa_asmbl_6637.p1 fails validation.
(AAC)	 AG	177068-177114	GT	TGG
(CCG)	 AG	177332-177455	GT	AGG
(GTG)	 AG	177753-177908	GT	AGG
(CTG)	 AG	180854-181012	GT	AGG
(GTG)	 AG	181190-181315	TT	ACT
-recovered pasa_asmbl_6637.p1, internal, 177068, 177114
-recovered pasa_asmbl_6637.p1, internal, 177332, 177455
-recovered pasa_asmbl_6637.p1, internal, 177753, 177908
-recovered pasa_asmbl_6637.p1, internal, 180854, 181012
Valid prediction for Augustus_model.g17883.t1
Valid prediction for snap_scaffold_11-snap.1162-T1
Valid prediction for Augustus_model.g17875.t1
Valid prediction for pasa_asmbl_6622.p1
Couldn't classify 113733, 113763
Sorry, prediction pasa_asmbl_6640.p1 fails validation.
(GCT)	 AG	113733-113763	GT	TGG
(AGT)	 AG	114195-114338	GT	CGG
(GCA)	 AG	114762-114868	GT	AGG
(GAC)	 AG	114954-115089	GT	AGG
(AGT)	 AG	115661-115689	AT	GAA
-recovered pasa_asmbl_6640.p1, terminal, 115661, 115689
-recovered pasa_asmbl_6640.p1, internal, 113733, 113763
-recovered pasa_asmbl_6640.p1, internal, 114195, 114338
-recovered pasa_asmbl_6640.p1, internal, 114762, 114868
-recovered pasa_asmbl_6640.p1, internal, 114954, 115089
Valid prediction for Augustus_model.g17893.t1
Valid prediction for snap_scaffold_11-snap.1195-T1
Valid prediction for snap_scaffold_11-snap.1186-T1
Valid prediction for snap_scaffold_11-snap.1160-T1
Valid prediction for snap_scaffold_11-snap.1155-T1
Valid prediction for snap_scaffold_11-snap.1174-T1
Valid prediction for GlimmerHMM_glimmerT_27053-T1
Valid prediction for pasa_asmbl_6629.p1
Valid prediction for GlimmerHMM_glimmerT_27054-T1
Couldn't classify 171768, 171806
Couldn't classify 174462, 174854
Sorry, prediction pasa_asmbl_6638.p1 fails validation.
(GAC)	 AG	171768-171806	GT	AGG
(GTG)	 AG	172518-172701	GT	GGG
(TTC)	 AG	174071-174189	GT	AGG
(GTG)	 AG	174462-174854	GA	AAG
-recovered pasa_asmbl_6638.p1, internal, 171768, 171806
-recovered pasa_asmbl_6638.p1, internal, 172518, 172701
-recovered pasa_asmbl_6638.p1, internal, 174071, 174189
Valid prediction for Augustus_model.g17897.t1
Valid prediction for snap_scaffold_11-snap.1172-T1
Valid prediction for snap_scaffold_11-snap.1171-T1
Couldn't classify 228497, 228638
Sorry, prediction pasa_asmbl_6621.p1 fails validation.
(ATG)	 CC	226912-227324	GT	AGG
(GAA)	 AG	228174-228284	GT	GAG
(GAT)	 AG	228497-228638	TC	GCT
-recovered pasa_asmbl_6621.p1, initial, 226912, 227324
-recovered pasa_asmbl_6621.p1, internal, 228174, 228284
Valid prediction for GlimmerHMM_glimmerT_27052-T1
Valid prediction for GlimmerHMM_glimmerT_27051-T1
Valid prediction for pasa_asmbl_6644.p1
Valid prediction for snap_scaffold_11-snap.1180-T1
Valid prediction for GlimmerHMM_glimmerT_27049-T1
Valid prediction for snap_scaffold_11-snap.1150-T1
Valid prediction for snap_scaffold_11-snap.1192-T1
Valid prediction for snap_scaffold_11-snap.1184-T1
Valid prediction for GlimmerHMM_glimmerT_27048-T1
Valid prediction for HiQ_model.g17877.t1
Valid prediction for GlimmerHMM_glimmerT_27039-T1
Valid prediction for GlimmerHMM_glimmerT_27058-T1
Valid prediction for snap_scaffold_11-snap.1181-T1
Valid prediction for snap_scaffold_11-snap.1157-T1
Valid prediction for Augustus_model.g17885.t1
Couldn't classify 228729, 229182
Sorry, prediction pasa_asmbl_6620.p1 fails validation.
(GGC)	 TC	228729-229182	GT	TGG
(GCT)	 AG	229515-229780	GC	AGG
-recovered pasa_asmbl_6620.p1, terminal, 229515, 229780
-recovered pasa_asmbl_6620.p1, internal, 229515, 229780
Valid prediction for snap_scaffold_11-snap.1190-T1
Valid prediction for snap_scaffold_11-snap.1187-T1
Valid prediction for GlimmerHMM_glimmerT_27037-T1
Valid prediction for GlimmerHMM_glimmerT_27044-T1
Valid prediction for snap_scaffold_11-snap.1153-T1
Valid prediction for Augustus_model.g17884.t1
Valid prediction for GlimmerHMM_glimmerT_27055-T1
Valid prediction for CodingQuarry_transcript_8051-T1
Valid prediction for CodingQuarry_transcript_8054-T1
Valid prediction for snap_scaffold_11-snap.1178-T1
Valid prediction for GlimmerHMM_glimmerT_27035-T1
Valid prediction for snap_scaffold_11-snap.1176-T1
Valid prediction for snap_scaffold_11-snap.1170-T1
Valid prediction for HiQ_model.g17892.t1
Valid prediction for GlimmerHMM_glimmerT_27057-T1
Valid prediction for GlimmerHMM_glimmerT_27043-T1
Valid prediction for HiQ_model.g17881.t1
Valid prediction for Augustus_model.g17894.t1
Couldn't classify 163784, 163904
Couldn't classify 171129, 171155
Sorry, prediction pasa_asmbl_6639.p1 fails validation.
(GGG)	 GA	163784-163904	GT	AGG
(GGT)	 AG	164420-164572	GT	GGG
(AAA)	 AG	164960-165153	GT	AGG
(ATC)	 AG	165415-165513	GT	AGG
(GCC)	 AG	165690-165845	GT	AGG
(GAC)	 AG	165965-166093	GT	ATG
(GCT)	 AG	166316-166441	GT	AGG
(GAG)	 AG	166847-166905	GT	CGG
(GTG)	 AG	168800-168908	GT	AGG
(TAT)	 AG	170463-170573	GT	AGG
(ATC)	 AG	171129-171155	CT	TGC
-recovered pasa_asmbl_6639.p1, internal, 164420, 164572
-recovered pasa_asmbl_6639.p1, internal, 164960, 165153
-recovered pasa_asmbl_6639.p1, internal, 165415, 165513
-recovered pasa_asmbl_6639.p1, internal, 165690, 165845
-recovered pasa_asmbl_6639.p1, internal, 165965, 166093
-recovered pasa_asmbl_6639.p1, internal, 166316, 166441
-recovered pasa_asmbl_6639.p1, internal, 166847, 166905
-recovered pasa_asmbl_6639.p1, internal, 168800, 168908
-recovered pasa_asmbl_6639.p1, internal, 170463, 170573
Valid prediction for Augustus_model.g17890.t1
Valid prediction for Augustus_model.g17889.t1
Valid prediction for snap_scaffold_11-snap.1173-T1
Valid prediction for snap_scaffold_11-snap.1151-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 25190, rend_intergenic: 18225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57514, rend_intergenic: 46498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62354, rend_intergenic: 57522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82545, rend_intergenic: 62368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87680, rend_intergenic: 82953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120476, rend_intergenic: 94268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138837, rend_intergenic: 133377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142821, rend_intergenic: 139766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147205, rend_intergenic: 144844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155422, rend_intergenic: 147457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174140, rend_intergenic: 156315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183824, rend_intergenic: 175382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197120, rend_intergenic: 195579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207914, rend_intergenic: 198432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213080, rend_intergenic: 212555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230985, rend_intergenic: 214217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 237589
-exon list size: 490


building trellis

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46.7    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.4    
48.6    
48.8    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.2    
51.4    
51.6    
51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.3    
53.5    
53.7    
53.9    
54.1    
54.3    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.3    
57.5    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.6    
59.8    
60.0    
60.2    
60.4    
60.6    
60.8    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.6    
62.8    
63.0    
63.2    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.8    
74.0    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.6    
84.8    
85.0    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
90.0    
90.2    
90.4    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 25190, rend_intergenic: 18225  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57514, rend_intergenic: 46498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62354, rend_intergenic: 57522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82545, rend_intergenic: 62368  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87680, rend_intergenic: 82953  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120476, rend_intergenic: 94268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138837, rend_intergenic: 133377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142821, rend_intergenic: 139766  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147205, rend_intergenic: 144844  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155422, rend_intergenic: 147457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174140, rend_intergenic: 156315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183824, rend_intergenic: 175382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197120, rend_intergenic: 195579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 207914, rend_intergenic: 198432  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213080, rend_intergenic: 212555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230985, rend_intergenic: 214217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 217140 - 237589
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 217140 - 230899
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 217140 - 229916
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support