-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_4008833-4158922

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_11-snap.999-T1
Valid prediction for GlimmerHMM_glimmerT_26932-T1
Valid prediction for Augustus_model.g17818.t1
Valid prediction for GlimmerHMM_glimmerT_26941-T1
Valid prediction for snap_scaffold_11-snap.1003-T1
Valid prediction for snap_scaffold_11-snap.1009-T1
Valid prediction for snap_scaffold_11-snap.1007-T1
Valid prediction for GlimmerHMM_glimmerT_26947-T1
Valid prediction for GlimmerHMM_glimmerT_26943-T1
Valid prediction for snap_scaffold_11-snap.989-T1
Valid prediction for GlimmerHMM_glimmerT_26949-T1
Valid prediction for GlimmerHMM_glimmerT_26948-T1
Valid prediction for snap_scaffold_11-snap.1000-T1
Valid prediction for snap_scaffold_11-snap.1015-T1
Valid prediction for GlimmerHMM_glimmerT_26951-T1
Valid prediction for GlimmerHMM_glimmerT_26940-T1
Valid prediction for GlimmerHMM_glimmerT_26950-T1
Valid prediction for snap_scaffold_11-snap.1006-T1
Valid prediction for snap_scaffold_11-snap.1011-T1
Valid prediction for snap_scaffold_11-snap.993-T1
Valid prediction for snap_scaffold_11-snap.986-T1
Valid prediction for snap_scaffold_11-snap.1001-T1
Valid prediction for snap_scaffold_11-snap.995-T1
Valid prediction for Augustus_model.g17823.t1
Valid prediction for snap_scaffold_11-snap.1012-T1
Valid prediction for snap_scaffold_11-snap.988-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.1013-T1
Valid prediction for snap_scaffold_11-snap.1005-T1
Valid prediction for Augustus_model.g17820.t1
Valid prediction for snap_scaffold_11-snap.1002-T1
Valid prediction for Augustus_model.g17819.t1
Valid prediction for GlimmerHMM_glimmerT_26935-T1
Valid prediction for GlimmerHMM_glimmerT_26942-T1
Valid prediction for Augustus_model.g17821.t1
Valid prediction for GlimmerHMM_glimmerT_26952-T1
Valid prediction for snap_scaffold_11-snap.997-T1
Valid prediction for snap_scaffold_11-snap.1014-T1
Valid prediction for GlimmerHMM_glimmerT_26934-T1
Couldn't classify 94914, 95567
Sorry, prediction pasa_asmbl_6591.p1 fails validation.
(TTC)	 GC	94914-95567	AG	GTA
Valid prediction for snap_scaffold_11-snap.994-T1
Valid prediction for snap_scaffold_11-snap.987-T1
Valid prediction for GlimmerHMM_glimmerT_26946-T1
Valid prediction for GlimmerHMM_glimmerT_26944-T1
Valid prediction for snap_scaffold_11-snap.990-T1
Valid prediction for snap_scaffold_11-snap.1004-T1
Valid prediction for snap_scaffold_11-snap.992-T1
Valid prediction for snap_scaffold_11-snap.1008-T1
Valid prediction for GlimmerHMM_glimmerT_26945-T1
Valid prediction for GlimmerHMM_glimmerT_26936-T1
Valid prediction for snap_scaffold_11-snap.1010-T1
Valid prediction for GlimmerHMM_glimmerT_26933-T1
Valid prediction for snap_scaffold_11-snap.998-T1
Valid prediction for snap_scaffold_11-snap.991-T1
Valid prediction for snap_scaffold_11-snap.996-T1
Valid prediction for snap_scaffold_11-snap.1016-T1
Valid prediction for GlimmerHMM_glimmerT_26938-T1
Valid prediction for GlimmerHMM_glimmerT_26939-T1
Valid prediction for Augustus_model.g17822.t1
Valid prediction for GlimmerHMM_glimmerT_26937-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5416, rend_intergenic: 2942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23632, rend_intergenic: 11402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31717, rend_intergenic: 29119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34816, rend_intergenic: 33077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51451, rend_intergenic: 44032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73048, rend_intergenic: 61778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78436, rend_intergenic: 74324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107315, rend_intergenic: 89981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117807, rend_intergenic: 112149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120678, rend_intergenic: 120278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137282, rend_intergenic: 124804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142394, rend_intergenic: 138191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 150090
-exon list size: 222


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.7    
3.1    
3.6    
4.0    
4.5    
4.9    
5.4    
5.8    
6.2    
6.7    
7.1    
7.6    
8.0    
8.5    
8.9    
9.4    
9.8    
10.3    
10.7    
11.2    
11.6    
12.1    
12.5    
12.9    
13.4    
13.8    
14.3    
14.7    
15.2    
15.6    
16.1    
16.5    
17.0    
17.4    
17.9    
18.3    
18.8    
19.2    
19.6    
20.1    
20.5    
21.0    
21.4    
21.9    
22.3    
22.8    
23.2    
23.7    
24.1    
24.6    
25.0    
25.4    
25.9    
26.3    
26.8    
27.2    
27.7    
28.1    
28.6    
29.0    
29.5    
29.9    
30.4    
30.8    
31.2    
31.7    
32.1    
32.6    
33.0    
33.5    
33.9    
34.4    
34.8    
35.3    
35.7    
36.2    
36.6    
37.1    
37.5    
37.9    
38.4    
38.8    
39.3    
39.7    
40.2    
40.6    
41.1    
41.5    
42.0    
42.4    
42.9    
43.3    
43.8    
44.2    
44.6    
45.1    
45.5    
46.0    
46.4    
46.9    
47.3    
47.8    
48.2    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.8    
52.2    
52.7    
53.1    
53.6    
54.0    
54.5    
54.9    
55.4    
55.8    
56.2    
56.7    
57.1    
57.6    
58.0    
58.5    
58.9    
59.4    
59.8    
60.3    
60.7    
61.2    
61.6    
62.1    
62.5    
62.9    
63.4    
63.8    
64.3    
64.7    
65.2    
65.6    
66.1    
66.5    
67.0    
67.4    
67.9    
68.3    
68.8    
69.2    
69.6    
70.1    
70.5    
71.0    
71.4    
71.9    
72.3    
72.8    
73.2    
73.7    
74.1    
74.6    
75.0    
75.4    
75.9    
76.3    
76.8    
77.2    
77.7    
78.1    
78.6    
79.0    
79.5    
79.9    
80.4    
80.8    
81.2    
81.7    
82.1    
82.6    
83.0    
83.5    
83.9    
84.4    
84.8    
85.3    
85.7    
86.2    
86.6    
87.1    
87.5    
87.9    
88.4    
88.8    
89.3    
89.7    
90.2    
90.6    
91.1    
91.5    
92.0    
92.4    
92.9    
93.3    
93.8    
94.2    
94.6    
95.1    
95.5    
96.0    
96.4    
96.9    
97.3    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 5416, rend_intergenic: 2942  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23632, rend_intergenic: 11402  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31717, rend_intergenic: 29119  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34816, rend_intergenic: 33077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51451, rend_intergenic: 44032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73048, rend_intergenic: 61778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78436, rend_intergenic: 74324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107315, rend_intergenic: 89981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117807, rend_intergenic: 112149  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120678, rend_intergenic: 120278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137282, rend_intergenic: 124804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142394, rend_intergenic: 138191  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 137838 - 150090
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 138210 - 150090
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support