-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_358503-611510

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_11-snap.117-T1
Valid prediction for GlimmerHMM_glimmerT_26358-T1
Valid prediction for Augustus_model.g17483.t1
Valid prediction for snap_scaffold_11-snap.81-T1
Valid prediction for Augustus_model.g17482.t1
Valid prediction for Augustus_model.g17489.t1
Couldn't classify 223025, 223159
Sorry, prediction pasa_asmbl_5293.p1 fails validation.
(CCC)	 CC	223025-223159	GT	AGG
(TCC)	 AG	224402-224488	GT	AGG
(GTC)	 AG	224714-224832	GT	AGG
(AGA)	 AG	224935-224993	GT	AGG
(CTT)	 AG	225090-225187	GT	AGG
(ATC)	 AG	225738-225806	GT	CTG
(GTC)	 AG	226709-226753	GT	AGG
(TTT)	 AG	227807-227922	GT	AGG
(GGT)	 AG	228835-228892	AA	GAA
-recovered pasa_asmbl_5293.p1, terminal, 228835, 228892
-recovered pasa_asmbl_5293.p1, internal, 224402, 224488
-recovered pasa_asmbl_5293.p1, internal, 224714, 224832
-recovered pasa_asmbl_5293.p1, internal, 224935, 224993
-recovered pasa_asmbl_5293.p1, internal, 225090, 225187
-recovered pasa_asmbl_5293.p1, internal, 225738, 225806
-recovered pasa_asmbl_5293.p1, internal, 226709, 226753
-recovered pasa_asmbl_5293.p1, internal, 227807, 227922
Valid prediction for snap_scaffold_11-snap.105-T1
Valid prediction for GlimmerHMM_glimmerT_26363-T1
Valid prediction for Augustus_model.g17493.t1
Valid prediction for snap_scaffold_11-snap.96-T1
Valid prediction for snap_scaffold_11-snap.78-T1
Valid prediction for GlimmerHMM_glimmerT_26372-T1
Valid prediction for snap_scaffold_11-snap.94-T1
Valid prediction for snap_scaffold_11-snap.103-T1
Couldn't classify 211193, 211732
Sorry, prediction pasa_asmbl_5290.p1 fails validation.
(ATG)	 AA	208578-208706	GT	AGG
(GTT)	 AG	208872-208987	GT	GTG
(GCC)	 AG	209162-209264	GT	AGG
(GTG)	 AG	209451-209624	GT	TGG
(GAG)	 AG	209722-209802	GT	TGG
(GAG)	 AG	210070-210233	GT	CGG
(ACG)	 AG	210512-210612	GT	GGG
(GAG)	 AG	210920-211077	GT	AGG
(ATC)	 AG	211193-211732	GG	GGG
-recovered pasa_asmbl_5290.p1, initial, 208578, 208706
-recovered pasa_asmbl_5290.p1, internal, 208872, 208987
-recovered pasa_asmbl_5290.p1, internal, 209162, 209264
-recovered pasa_asmbl_5290.p1, internal, 209451, 209624
-recovered pasa_asmbl_5290.p1, internal, 209722, 209802
-recovered pasa_asmbl_5290.p1, internal, 210070, 210233
-recovered pasa_asmbl_5290.p1, internal, 210512, 210612
-recovered pasa_asmbl_5290.p1, internal, 210920, 211077
Valid prediction for snap_scaffold_11-snap.90-T1
Valid prediction for GlimmerHMM_glimmerT_26367-T1
Valid prediction for snap_scaffold_11-snap.102-T1
Couldn't classify 213183, 213481
Sorry, prediction pasa_asmbl_5291.p1 fails validation.
(ATC)	 AC	213183-213481	GT	CTG
(CCC)	 AG	213875-213947	GT	AGG
(GAA)	 AG	214034-214123	GT	AGG
(ATG)	 AG	214806-214928	GT	AGG
(GGA)	 AG	215086-215190	GT	TGG
(GCC)	 AG	215781-215844	GT	AGG
(GAA)	 AG	215939-216018	GT	AAG
(AAG)	 AG	216601-216702	GT	CGG
(GAA)	 AG	216836-216886	GT	AGG
(AGG)	 AG	217557-217793	GT	AGG
(GTG)	 AG	218845-218966	GT	GGG
(ATG)	 AG	219345-219394	GT	AGG
(GTA)	 AG	219771-219808	AC	AGA
-recovered pasa_asmbl_5291.p1, initial, 214806, 214928
-recovered pasa_asmbl_5291.p1, initial, 219345, 219394
-recovered pasa_asmbl_5291.p1, terminal, 219771, 219808
-recovered pasa_asmbl_5291.p1, internal, 213875, 213947
-recovered pasa_asmbl_5291.p1, internal, 214034, 214123
-recovered pasa_asmbl_5291.p1, internal, 214806, 214928
-recovered pasa_asmbl_5291.p1, internal, 215086, 215190
-recovered pasa_asmbl_5291.p1, internal, 215781, 215844
-recovered pasa_asmbl_5291.p1, internal, 215939, 216018
-recovered pasa_asmbl_5291.p1, internal, 216601, 216702
-recovered pasa_asmbl_5291.p1, internal, 216836, 216886
-recovered pasa_asmbl_5291.p1, internal, 217557, 217793
-recovered pasa_asmbl_5291.p1, internal, 218845, 218966
-recovered pasa_asmbl_5291.p1, internal, 219345, 219394
Valid prediction for snap_scaffold_11-snap.115-T1
Valid prediction for GlimmerHMM_glimmerT_26365-T1
Valid prediction for Augustus_model.g17481.t1
Valid prediction for snap_scaffold_11-snap.106-T1
Valid prediction for Augustus_model.g17487.t1
Valid prediction for GlimmerHMM_glimmerT_26345-T1
Valid prediction for GlimmerHMM_glimmerT_26371-T1
Valid prediction for GlimmerHMM_glimmerT_26359-T1
Valid prediction for snap_scaffold_11-snap.123-T1
Valid prediction for snap_scaffold_11-snap.98-T1
Valid prediction for snap_scaffold_11-snap.83-T1
Valid prediction for Augustus_model.g17496.t1
Valid prediction for GlimmerHMM_glimmerT_26355-T1
Valid prediction for snap_scaffold_11-snap.86-T1
Valid prediction for GlimmerHMM_glimmerT_26353-T1
Valid prediction for snap_scaffold_11-snap.89-T1
Valid prediction for snap_scaffold_11-snap.131-T1
Valid prediction for snap_scaffold_11-snap.119-T1
Valid prediction for Augustus_model.g17485.t1
Valid prediction for snap_scaffold_11-snap.113-T1
Valid prediction for snap_scaffold_11-snap.129-T1
Valid prediction for snap_scaffold_11-snap.76-T1
Valid prediction for GlimmerHMM_glimmerT_26373-T1
Valid prediction for snap_scaffold_11-snap.125-T1
Valid prediction for GlimmerHMM_glimmerT_26361-T1
Valid prediction for snap_scaffold_11-snap.88-T1
Valid prediction for GlimmerHMM_glimmerT_26343-T1
Valid prediction for snap_scaffold_11-snap.109-T1
Valid prediction for snap_scaffold_11-snap.91-T1
Valid prediction for snap_scaffold_11-snap.87-T1
Valid prediction for snap_scaffold_11-snap.99-T1
Valid prediction for snap_scaffold_11-snap.84-T1
Valid prediction for GlimmerHMM_glimmerT_26375-T1
Valid prediction for snap_scaffold_11-snap.92-T1
Valid prediction for snap_scaffold_11-snap.132-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g17490.t1
Valid prediction for GlimmerHMM_glimmerT_26346-T1
Valid prediction for Augustus_model.g17486.t1
Valid prediction for GlimmerHMM_glimmerT_26376-T1
Valid prediction for GlimmerHMM_glimmerT_26370-T1
Valid prediction for Augustus_model.g17484.t1
Valid prediction for snap_scaffold_11-snap.104-T1
Sorry, intron length (3) is less than minimum required (10)
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for HiQ_model.g17494.t1
Valid prediction for GlimmerHMM_glimmerT_26360-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_26349-T1
Valid prediction for snap_scaffold_11-snap.85-T1
Valid prediction for snap_scaffold_11-snap.82-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_11-snap.122-T1
Valid prediction for snap_scaffold_11-snap.121-T1
Valid prediction for snap_scaffold_11-snap.116-T1
Valid prediction for snap_scaffold_11-snap.130-T1
Valid prediction for Augustus_model.g17491.t1
Valid prediction for snap_scaffold_11-snap.120-T1
Valid prediction for snap_scaffold_11-snap.97-T1
Valid prediction for snap_scaffold_11-snap.111-T1
Valid prediction for snap_scaffold_11-snap.80-T1
Valid prediction for snap_scaffold_11-snap.114-T1
Valid prediction for snap_scaffold_11-snap.110-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_26374-T1
Valid prediction for GlimmerHMM_glimmerT_26352-T1
Valid prediction for Augustus_model.g17480.t1
Valid prediction for GlimmerHMM_glimmerT_26347-T1
Valid prediction for GlimmerHMM_glimmerT_26364-T1
Valid prediction for snap_scaffold_11-snap.101-T1
Valid prediction for GlimmerHMM_glimmerT_26350-T1
Valid prediction for GlimmerHMM_glimmerT_26344-T1
Valid prediction for snap_scaffold_11-snap.126-T1
Valid prediction for GlimmerHMM_glimmerT_26348-T1
Valid prediction for GlimmerHMM_glimmerT_26369-T1
Valid prediction for snap_scaffold_11-snap.77-T1
Valid prediction for GlimmerHMM_glimmerT_26362-T1
Valid prediction for snap_scaffold_11-snap.100-T1
Valid prediction for snap_scaffold_11-snap.128-T1
Valid prediction for Augustus_model.g17478.t1
Valid prediction for GlimmerHMM_glimmerT_26356-T1
Valid prediction for snap_scaffold_11-snap.93-T1
Valid prediction for Augustus_model.g17495.t1
Valid prediction for snap_scaffold_11-snap.127-T1
Valid prediction for CodingQuarry_transcript_7947-T1
Valid prediction for pasa_asmbl_6397.p1
Valid prediction for Augustus_model.g17488.t1
Valid prediction for pasa_asmbl_6395.p1
Valid prediction for snap_scaffold_11-snap.95-T1
Valid prediction for HiQ_model.g17492.t1
Valid prediction for Augustus_model.g17479.t1
Valid prediction for GlimmerHMM_glimmerT_26354-T1
Valid prediction for GlimmerHMM_glimmerT_26357-T1
Valid prediction for snap_scaffold_11-snap.79-T1
Valid prediction for snap_scaffold_11-snap.112-T1
Valid prediction for snap_scaffold_11-snap.118-T1
Valid prediction for GlimmerHMM_glimmerT_26368-T1
Valid prediction for GlimmerHMM_glimmerT_26351-T1
Valid prediction for snap_scaffold_11-snap.124-T1
Valid prediction for snap_scaffold_11-snap.108-T1
Valid prediction for GlimmerHMM_glimmerT_26366-T1
Valid prediction for snap_scaffold_11-snap.107-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9140, rend_intergenic: 6101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9925, rend_intergenic: 9672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12949, rend_intergenic: 10547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17147, rend_intergenic: 13325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27623, rend_intergenic: 19382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65622, rend_intergenic: 28390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79750, rend_intergenic: 66860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84745, rend_intergenic: 81201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98418, rend_intergenic: 85331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102270, rend_intergenic: 98423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107593, rend_intergenic: 103027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139850, rend_intergenic: 132835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144449, rend_intergenic: 140367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152104, rend_intergenic: 144772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163077, rend_intergenic: 152883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170118, rend_intergenic: 163457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171632, rend_intergenic: 171235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174462, rend_intergenic: 173344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181490, rend_intergenic: 176259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186593, rend_intergenic: 181745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187585, rend_intergenic: 186975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189242, rend_intergenic: 187588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213485, rend_intergenic: 209474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228630, rend_intergenic: 213979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246946, rend_intergenic: 232264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 236939, rend_intergenic: 236936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 253008
-exon list size: 648


building trellis

0.2    
0.3    
0.5    
0.6    
0.8    
0.9    
1.1    
1.2    
1.4    
1.5    
1.7    
1.8    
2.0    
2.2    
2.3    
2.5    
2.6    
2.8    
2.9    
3.1    
3.2    
3.4    
3.5    
3.7    
3.8    
4.0    
4.2    
4.3    
4.5    
4.6    
4.8    
4.9    
5.1    
5.2    
5.4    
5.5    
5.7    
5.8    
6.0    
6.2    
6.3    
6.5    
6.6    
6.8    
6.9    
7.1    
7.2    
7.4    
7.5    
7.7    
7.8    
8.0    
8.2    
8.3    
8.5    
8.6    
8.8    
8.9    
9.1    
9.2    
9.4    
9.5    
9.7    
9.8    
10.0    
10.2    
10.3    
10.5    
10.6    
10.8    
10.9    
11.1    
11.2    
11.4    
11.5    
11.7    
11.8    
12.0    
12.2    
12.3    
12.5    
12.6    
12.8    
12.9    
13.1    
13.2    
13.4    
13.5    
13.7    
13.8    
14.0    
14.2    
14.3    
14.5    
14.6    
14.8    
14.9    
15.1    
15.2    
15.4    
15.5    
15.7    
15.8    
16.0    
16.2    
16.3    
16.5    
16.6    
16.8    
16.9    
17.1    
17.2    
17.4    
17.5    
17.7    
17.8    
18.0    
18.2    
18.3    
18.5    
18.6    
18.8    
18.9    
19.1    
19.2    
19.4    
19.5    
19.7    
19.8    
20.0    
20.2    
20.3    
20.5    
20.6    
20.8    
20.9    
21.1    
21.2    
21.4    
21.5    
21.7    
21.8    
22.0    
22.2    
22.3    
22.5    
22.6    
22.8    
22.9    
23.1    
23.2    
23.4    
23.5    
23.7    
23.8    
24.0    
24.2    
24.3    
24.5    
24.6    
24.8    
24.9    
25.1    
25.2    
25.4    
25.5    
25.7    
25.8    
26.0    
26.2    
26.3    
26.5    
26.6    
26.8    
26.9    
27.1    
27.2    
27.4    
27.5    
27.7    
27.8    
28.0    
28.2    
28.3    
28.5    
28.6    
28.8    
28.9    
29.1    
29.2    
29.4    
29.5    
29.7    
29.8    
30.0    
30.2    
30.3    
30.5    
30.6    
30.8    
30.9    
31.1    
31.2    
31.4    
31.5    
31.7    
31.8    
32.0    
32.2    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.2    
33.4    
33.5    
33.7    
33.8    
34.0    
34.2    
34.3    
34.5    
34.6    
34.8    
34.9    
35.1    
35.2    
35.4    
35.5    
35.7    
35.8    
36.0    
36.2    
36.3    
36.5    
36.6    
36.8    
36.9    
37.1    
37.2    
37.4    
37.5    
37.7    
37.8    
38.0    
38.2    
38.3    
38.5    
38.6    
38.8    
38.9    
39.1    
39.2    
39.4    
39.5    
39.7    
39.8    
40.0    
40.2    
40.3    
40.5    
40.6    
40.8    
40.9    
41.1    
41.2    
41.4    
41.5    
41.7    
41.8    
42.0    
42.2    
42.3    
42.5    
42.6    
42.8    
42.9    
43.1    
43.2    
43.4    
43.5    
43.7    
43.8    
44.0    
44.2    
44.3    
44.5    
44.6    
44.8    
44.9    
45.1    
45.2    
45.4    
45.5    
45.7    
45.8    
46.0    
46.2    
46.3    
46.5    
46.6    
46.8    
46.9    
47.1    
47.2    
47.4    
47.5    
47.7    
47.8    
48.0    
48.2    
48.3    
48.5    
48.6    
48.8    
48.9    
49.1    
49.2    
49.4    
49.5    
49.7    
49.8    
50.0    
50.2    
50.3    
50.5    
50.6    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.7    
51.8    
52.0    
52.2    
52.3    
52.5    
52.6    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.2    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.6    
56.8    
56.9    
57.1    
57.2    
57.4    
57.5    
57.7    
57.8    
58.0    
58.2    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
60.0    
60.2    
60.3    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.7    
61.8    
62.0    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.1    
65.2    
65.4    
65.5    
65.7    
65.8    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.8    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.4    
69.5    
69.7    
69.8    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.7    
71.8    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.2    
73.4    
73.5    
73.7    
73.8    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.1    
75.2    
75.4    
75.5    
75.7    
75.8    
76.0    
76.2    
76.3    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.2    
78.3    
78.5    
78.6    
78.8    
78.9    
79.1    
79.2    
79.4    
79.5    
79.7    
79.8    
80.0    
80.2    
80.3    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.2    
82.3    
82.5    
82.6    
82.8    
82.9    
83.1    
83.2    
83.4    
83.5    
83.7    
83.8    
84.0    
84.2    
84.3    
84.5    
84.6    
84.8    
84.9    
85.1    
85.2    
85.4    
85.5    
85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.2    
87.4    
87.5    
87.7    
87.8    
88.0    
88.2    
88.3    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.2    
90.3    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.2    
92.3    
92.5    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.6    
94.8    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.6    
96.8    
96.9    
97.1    
97.2    
97.4    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 9140, rend_intergenic: 6101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9925, rend_intergenic: 9672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12949, rend_intergenic: 10547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17147, rend_intergenic: 13325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27623, rend_intergenic: 19382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65622, rend_intergenic: 28390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79750, rend_intergenic: 66860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84745, rend_intergenic: 81201  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98418, rend_intergenic: 85331  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102270, rend_intergenic: 98423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107593, rend_intergenic: 103027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139850, rend_intergenic: 132835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144449, rend_intergenic: 140367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152104, rend_intergenic: 144772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163077, rend_intergenic: 152883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170118, rend_intergenic: 163457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171632, rend_intergenic: 171235  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174462, rend_intergenic: 173344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181490, rend_intergenic: 176259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186593, rend_intergenic: 181745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187585, rend_intergenic: 186975  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189242, rend_intergenic: 187588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213485, rend_intergenic: 209474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 228630, rend_intergenic: 213979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246946, rend_intergenic: 232264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 236939, rend_intergenic: 236936  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support