-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_17092489-17337465

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 218500, 218679
Sorry, prediction pasa_asmbl_6206.p1 fails validation.
(ATG)	 AG	217141-217383	GT	AGG
(GTG)	 AG	217753-217939	GT	CGG
(GTT)	 AG	218076-218347	GT	AGG
(GTG)	 AG	218500-218679	CA	GGC
-recovered pasa_asmbl_6206.p1, initial, 217141, 217383
-recovered pasa_asmbl_6206.p1, internal, 217141, 217383
-recovered pasa_asmbl_6206.p1, internal, 217753, 217939
-recovered pasa_asmbl_6206.p1, internal, 218076, 218347
Valid prediction for snap_scaffold_11-snap.3517-T1
Valid prediction for pasa_asmbl_6211.p1
Couldn't classify 240713, 240931
Sorry, prediction pasa_asmbl_6209.p1 fails validation.
(ATG)	 AG	223781-223807	GT	AGG
(ATC)	 AG	223909-224055	GT	AGG
(GTG)	 AG	224175-224341	GT	AGG
(CAT)	 AG	224520-224693	GT	AGG
(GTT)	 AG	224801-225152	GT	AGG
(GCT)	 AG	225309-225503	GT	TGG
(ATC)	 AG	225599-225881	GT	CGG
(GTC)	 AG	225982-226082	GT	AGG
(GCG)	 AG	226262-226421	GT	CAG
(GTG)	 AG	226560-226800	GT	AAG
(GCT)	 AG	227079-227262	GT	AGG
(ATC)	 AG	227432-227644	GT	AGG
(GTG)	 AG	227997-228235	GT	AAG
(GAT)	 AG	228471-228627	GT	ATG
(GTG)	 AG	228983-229210	GT	AGG
(ATC)	 AG	229509-229739	GT	AGG
(AGG)	 AG	229875-230015	GT	AGG
(GTG)	 AG	230196-230429	GT	AGG
(GTG)	 AG	230527-230733	GT	AGG
(ATG)	 AG	230982-231103	GT	AGG
(GTT)	 AG	231195-231360	GT	AGG
(GAG)	 AG	231453-231616	GT	AGG
(ACT)	 AG	231730-231859	GT	AGG
(GAC)	 AG	231973-232106	GT	AGG
(GAT)	 AG	232312-232426	GT	AGG
(GTC)	 AG	232566-232727	GT	AGG
(GTG)	 AG	232941-233155	GT	AGG
(GTG)	 AG	233240-233444	GT	AGG
(GCT)	 AG	233631-233804	GT	AGG
(GTG)	 AG	233917-234036	GT	AGG
(GTG)	 AG	234144-234264	GT	CGG
(CTG)	 AG	234634-234829	GT	AGG
(CGA)	 AG	235546-235663	GT	AGG
(CTG)	 AG	235913-236128	GT	AGG
(GTG)	 AG	236287-236499	GT	AGG
(TTC)	 AG	236612-236739	GT	AGG
(GTA)	 AG	236912-237065	GT	AGG
(GAT)	 AG	237181-237327	GT	CGG
(GTG)	 AG	237471-237621	GT	GGG
(GTG)	 AG	237780-238033	GT	AGG
(ATG)	 AG	238163-238297	GT	AGG
(GTG)	 AG	238384-238478	GT	AAG
(CGA)	 AG	238597-238771	GT	AGG
(CAA)	 AG	238862-238937	GT	CAG
(CTA)	 AG	239062-239222	GT	AGG
(GTG)	 AG	239344-239455	GT	CGG
(GTT)	 AG	239540-239600	GT	AGG
(GTG)	 AG	239717-239840	GT	AGG
(GTA)	 AG	239969-240082	GT	AGG
(GCT)	 AG	240240-240410	GT	AGG
(GGC)	 AG	240713-240931	TC	GGT
-recovered pasa_asmbl_6209.p1, initial, 223781, 223807
-recovered pasa_asmbl_6209.p1, initial, 230982, 231103
-recovered pasa_asmbl_6209.p1, initial, 238163, 238297
-recovered pasa_asmbl_6209.p1, internal, 223781, 223807
-recovered pasa_asmbl_6209.p1, internal, 223909, 224055
-recovered pasa_asmbl_6209.p1, internal, 224175, 224341
-recovered pasa_asmbl_6209.p1, internal, 224520, 224693
-recovered pasa_asmbl_6209.p1, internal, 224801, 225152
-recovered pasa_asmbl_6209.p1, internal, 225309, 225503
-recovered pasa_asmbl_6209.p1, internal, 225599, 225881
-recovered pasa_asmbl_6209.p1, internal, 225982, 226082
-recovered pasa_asmbl_6209.p1, internal, 226262, 226421
-recovered pasa_asmbl_6209.p1, internal, 226560, 226800
-recovered pasa_asmbl_6209.p1, internal, 227079, 227262
-recovered pasa_asmbl_6209.p1, internal, 227432, 227644
-recovered pasa_asmbl_6209.p1, internal, 227997, 228235
-recovered pasa_asmbl_6209.p1, internal, 228471, 228627
-recovered pasa_asmbl_6209.p1, internal, 228983, 229210
-recovered pasa_asmbl_6209.p1, internal, 229509, 229739
-recovered pasa_asmbl_6209.p1, internal, 229875, 230015
-recovered pasa_asmbl_6209.p1, internal, 230196, 230429
-recovered pasa_asmbl_6209.p1, internal, 230527, 230733
-recovered pasa_asmbl_6209.p1, internal, 230982, 231103
-recovered pasa_asmbl_6209.p1, internal, 231195, 231360
-recovered pasa_asmbl_6209.p1, internal, 231453, 231616
-recovered pasa_asmbl_6209.p1, internal, 231730, 231859
-recovered pasa_asmbl_6209.p1, internal, 231973, 232106
-recovered pasa_asmbl_6209.p1, internal, 232312, 232426
-recovered pasa_asmbl_6209.p1, internal, 232566, 232727
-recovered pasa_asmbl_6209.p1, internal, 232941, 233155
-recovered pasa_asmbl_6209.p1, internal, 233240, 233444
-recovered pasa_asmbl_6209.p1, internal, 233631, 233804
-recovered pasa_asmbl_6209.p1, internal, 233917, 234036
-recovered pasa_asmbl_6209.p1, internal, 234144, 234264
-recovered pasa_asmbl_6209.p1, internal, 234634, 234829
-recovered pasa_asmbl_6209.p1, internal, 235546, 235663
-recovered pasa_asmbl_6209.p1, internal, 235913, 236128
-recovered pasa_asmbl_6209.p1, internal, 236287, 236499
-recovered pasa_asmbl_6209.p1, internal, 236612, 236739
-recovered pasa_asmbl_6209.p1, internal, 236912, 237065
-recovered pasa_asmbl_6209.p1, internal, 237181, 237327
-recovered pasa_asmbl_6209.p1, internal, 237471, 237621
-recovered pasa_asmbl_6209.p1, internal, 237780, 238033
-recovered pasa_asmbl_6209.p1, internal, 238163, 238297
-recovered pasa_asmbl_6209.p1, internal, 238384, 238478
-recovered pasa_asmbl_6209.p1, internal, 238597, 238771
-recovered pasa_asmbl_6209.p1, internal, 238862, 238937
-recovered pasa_asmbl_6209.p1, internal, 239062, 239222
-recovered pasa_asmbl_6209.p1, internal, 239344, 239455
-recovered pasa_asmbl_6209.p1, internal, 239540, 239600
-recovered pasa_asmbl_6209.p1, internal, 239717, 239840
-recovered pasa_asmbl_6209.p1, internal, 239969, 240082
-recovered pasa_asmbl_6209.p1, internal, 240240, 240410
Valid prediction for snap_scaffold_11-snap.3503-T1
Valid prediction for Augustus_model.g18942.t1
Valid prediction for snap_scaffold_11-snap.3515-T1
Valid prediction for GlimmerHMM_glimmerT_28599-T1
Valid prediction for GlimmerHMM_glimmerT_28601-T1
Valid prediction for snap_scaffold_11-snap.3504-T1
Valid prediction for HiQ_model.g18952.t1
Valid prediction for snap_scaffold_11-snap.3494-T1
Valid prediction for snap_scaffold_11-snap.3499-T1
Valid prediction for GlimmerHMM_glimmerT_28603-T1
Valid prediction for Augustus_model.g18932.t1
Valid prediction for snap_scaffold_11-snap.3532-T1
Valid prediction for CodingQuarry_transcript_8361-T1
Valid prediction for GlimmerHMM_glimmerT_28605-T1
Valid prediction for Augustus_model.g18938.t1
Valid prediction for snap_scaffold_11-snap.3519-T1
Valid prediction for snap_scaffold_11-snap.3505-T1
Valid prediction for GlimmerHMM_glimmerT_28612-T1
Valid prediction for CodingQuarry_transcript_8358-T1
Valid prediction for pasa_asmbl_6202.p1
Valid prediction for snap_scaffold_11-snap.3514-T1
Valid prediction for HiQ_model.g18937.t1
Valid prediction for snap_scaffold_11-snap.3491-T1
Valid prediction for snap_scaffold_11-snap.3512-T1
Valid prediction for Augustus_model.g18946.t1
Valid prediction for snap_scaffold_11-snap.3523-T1
Valid prediction for snap_scaffold_11-snap.3510-T1
Valid prediction for Augustus_model.g18950.t1
Valid prediction for snap_scaffold_11-snap.3527-T1
Couldn't classify 215478, 215816
Sorry, prediction pasa_asmbl_6205.p1 fails validation.
(TCA)	 CA	215478-215816	GG	AAG
Valid prediction for GlimmerHMM_glimmerT_28608-T1
Valid prediction for Augustus_model.g18933.t1
Valid prediction for snap_scaffold_11-snap.3493-T1
Couldn't classify 219149, 219634
Sorry, prediction pasa_asmbl_6207.p1 fails validation.
(GAA)	 TG	219149-219634	AG	GCA
Valid prediction for snap_scaffold_11-snap.3486-T1
Couldn't classify 118504, 118538
Couldn't classify 121755, 121907
Sorry, prediction pasa_asmbl_6281.p2 fails validation.
(CTG)	 AT	118504-118538	GT	AGG
(GAG)	 AG	118768-118882	GT	AGG
(GTC)	 AG	121755-121907	CT	AGC
-recovered pasa_asmbl_6281.p2, internal, 118768, 118882
Valid prediction for CodingQuarry_transcript_8359-T1
Valid prediction for snap_scaffold_11-snap.3490-T1
Valid prediction for Augustus_model.g18935.t1
Valid prediction for GlimmerHMM_glimmerT_28617-T1
Valid prediction for snap_scaffold_11-snap.3530-T1
Valid prediction for snap_scaffold_11-snap.3522-T1
Valid prediction for pasa_asmbl_6193.p1
Valid prediction for snap_scaffold_11-snap.3520-T1
Valid prediction for HiQ_model.g18940.t1
Couldn't classify 240186, 240410
Couldn't classify 240713, 240931
Sorry, prediction pasa_asmbl_6210.p1 fails validation.
(TTT)	 TT	240186-240410	GT	AGG
(GGC)	 AG	240713-240931	TC	GGT
Valid prediction for snap_scaffold_11-snap.3524-T1
Valid prediction for GlimmerHMM_glimmerT_28607-T1
Valid prediction for Augustus_model.g18934.t1
Valid prediction for GlimmerHMM_glimmerT_28610-T1
Valid prediction for snap_scaffold_11-snap.3502-T1
Couldn't classify 125308, 125439
Couldn't classify 126888, 127007
Sorry, prediction pasa_asmbl_6203.p1 fails validation.
(GGT)	 CA	125308-125439	GT	AGG
(GTG)	 AG	125691-125861	GT	ATG
(GAG)	 AG	126125-126265	GT	AGG
(GTG)	 AG	126888-127007	CA	TCC
-recovered pasa_asmbl_6203.p1, internal, 125691, 125861
-recovered pasa_asmbl_6203.p1, internal, 126125, 126265
Valid prediction for snap_scaffold_11-snap.3525-T1
Valid prediction for snap_scaffold_11-snap.3528-T1
Valid prediction for snap_scaffold_11-snap.3508-T1
Couldn't classify 219806, 220006
Couldn't classify 220520, 220642
Sorry, prediction pasa_asmbl_6208.p1 fails validation.
(TCT)	 TC	219806-220006	GT	AGG
(GTG)	 AG	220186-220365	GT	AGG
(ATC)	 AG	220520-220642	AA	ACA
-recovered pasa_asmbl_6208.p1, internal, 220186, 220365
Valid prediction for GlimmerHMM_glimmerT_28609-T1
Valid prediction for GlimmerHMM_glimmerT_28606-T1
Valid prediction for HiQ_model.g18931.t1
Valid prediction for GlimmerHMM_glimmerT_28595-T1
Valid prediction for GlimmerHMM_glimmerT_28614-T1
Valid prediction for Augustus_model.g18947.t1
Valid prediction for snap_scaffold_11-snap.3495-T1
Valid prediction for GlimmerHMM_glimmerT_28621-T1
Valid prediction for snap_scaffold_11-snap.3501-T1
Valid prediction for GlimmerHMM_glimmerT_28618-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_28620-T1
Valid prediction for pasa_asmbl_7256.p1
Valid prediction for snap_scaffold_11-snap.3488-T1
Valid prediction for GlimmerHMM_glimmerT_28597-T1
Valid prediction for snap_scaffold_11-snap.3487-T1
Valid prediction for Augustus_model.g18936.t1
Valid prediction for snap_scaffold_11-snap.3509-T1
Valid prediction for GlimmerHMM_glimmerT_28598-T1
Valid prediction for GlimmerHMM_glimmerT_28615-T1
Valid prediction for snap_scaffold_11-snap.3526-T1
Sorry, intron length (7) is less than minimum required (10)
Couldn't classify 140369, 140773
Sorry, prediction pasa_asmbl_7255.p1 fails validation.
(GGC)	 TG	140369-140773	TC	TGT
Valid prediction for snap_scaffold_11-snap.3513-T1
Valid prediction for snap_scaffold_11-snap.3497-T1
Valid prediction for snap_scaffold_11-snap.3492-T1
Valid prediction for snap_scaffold_11-snap.3498-T1
Valid prediction for Augustus_model.g18941.t1
Valid prediction for Augustus_model.g18949.t1
Valid prediction for snap_scaffold_11-snap.3489-T1
Valid prediction for GlimmerHMM_glimmerT_28611-T1
Valid prediction for Augustus_model.g18948.t1
Valid prediction for snap_scaffold_11-snap.3506-T1
Valid prediction for Augustus_model.g18943.t1
Valid prediction for GlimmerHMM_glimmerT_28602-T1
Valid prediction for GlimmerHMM_glimmerT_28596-T1
Valid prediction for snap_scaffold_11-snap.3500-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_28619-T1
Valid prediction for Augustus_model.g18944.t1
Valid prediction for snap_scaffold_11-snap.3518-T1
Valid prediction for snap_scaffold_11-snap.3516-T1
Valid prediction for Augustus_model.g18939.t1
Valid prediction for snap_scaffold_11-snap.3529-T1
Valid prediction for GlimmerHMM_glimmerT_28600-T1
Valid prediction for snap_scaffold_11-snap.3496-T1
Valid prediction for GlimmerHMM_glimmerT_28616-T1
Valid prediction for CodingQuarry_transcript_8362-T1
Valid prediction for snap_scaffold_11-snap.3507-T1
Valid prediction for snap_scaffold_11-snap.3521-T1
Valid prediction for Augustus_model.g18951.t1
Valid prediction for snap_scaffold_11-snap.3531-T1
Valid prediction for GlimmerHMM_glimmerT_28604-T1
Valid prediction for GlimmerHMM_glimmerT_28613-T1
Valid prediction for snap_scaffold_11-snap.3533-T1
Couldn't classify 38202, 38393
Sorry, prediction pasa_asmbl_7262.p1 fails validation.
(CCT)	 CC	38202-38393	GT	TGG
(TTT)	 AG	39358-39468	GT	AGG
(CTC)	 AG	39674-39766	GT	AGG
(CTT)	 AG	39955-40085	GT	AGG
(GTT)	 AG	40268-40327	GT	AGG
(TAT)	 AG	40953-41061	GT	AGG
(CTG)	 AG	41245-41298	GT	CGG
(GTG)	 AG	41446-41616	GT	AGG
(GTG)	 AG	41792-41919	GT	AAG
(GAC)	 AG	42802-42903	GT	AAG
(AGA)	 AG	43075-43147	GT	AGG
(CTC)	 AG	43904-44038	AC	AGA
add_exon() Sorry, pasa_asmbl_7262.p1 42802-42903-terminal-1 is invalid.
-recovered pasa_asmbl_7262.p1, terminal, 42802, 42903
-recovered pasa_asmbl_7262.p1, terminal, 43904, 44038
-recovered pasa_asmbl_7262.p1, internal, 39358, 39468
-recovered pasa_asmbl_7262.p1, internal, 39674, 39766
-recovered pasa_asmbl_7262.p1, internal, 39955, 40085
-recovered pasa_asmbl_7262.p1, internal, 40268, 40327
-recovered pasa_asmbl_7262.p1, internal, 40953, 41061
-recovered pasa_asmbl_7262.p1, internal, 41245, 41298
-recovered pasa_asmbl_7262.p1, internal, 41446, 41616
-recovered pasa_asmbl_7262.p1, internal, 41792, 41919
-recovered pasa_asmbl_7262.p1, internal, 42802, 42903
-recovered pasa_asmbl_7262.p1, internal, 43075, 43147
Valid prediction for Augustus_model.g18945.t1
Valid prediction for snap_scaffold_11-snap.3511-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 39467, rend_intergenic: 39464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 111558, rend_intergenic: 111555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26860, rend_intergenic: 24967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39467, rend_intergenic: 30314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48749, rend_intergenic: 39887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56834, rend_intergenic: 51620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59140, rend_intergenic: 57745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83321, rend_intergenic: 66054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100106, rend_intergenic: 95228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136608, rend_intergenic: 129865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142136, rend_intergenic: 140814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152515, rend_intergenic: 147030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198215, rend_intergenic: 194457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211184, rend_intergenic: 202167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235174, rend_intergenic: 232292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 244117, rend_intergenic: 236233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 244977
-exon list size: 486


building trellis

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43.2    
43.4    
43.6    
43.9    
44.1    
44.3    
44.5    
44.7    
44.9    
45.1    
45.3    
45.5    
45.7    
45.9    
46.1    
46.3    
46.5    
46.7    
46.9    
47.1    
47.3    
47.5    
47.7    
48.0    
48.2    
48.4    
48.6    
48.8    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.2    
51.4    
51.6    
51.8    
52.0    
52.3    
52.5    
52.7    
52.9    
53.1    
53.3    
53.5    
53.7    
53.9    
54.1    
54.3    
54.5    
54.7    
54.9    
55.1    
55.3    
55.5    
55.7    
55.9    
56.1    
56.4    
56.6    
56.8    
57.0    
57.2    
57.4    
57.6    
57.8    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.8    
65.0    
65.2    
65.4    
65.6    
65.8    
66.0    
66.2    
66.4    
66.6    
66.8    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.7    
73.0    
73.2    
73.4    
73.6    
73.8    
74.0    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.3    
77.5    
77.7    
77.9    
78.1    
78.3    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.2    
83.4    
83.6    
83.8    
84.0    
84.2    
84.4    
84.6    
84.8    
85.0    
85.2    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.7    
87.9    
88.1    
88.3    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.9    
94.1    
94.3    
94.5    
94.7    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.5    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 36 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 39467, rend_intergenic: 39464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 111558, rend_intergenic: 111555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26860, rend_intergenic: 24967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39467, rend_intergenic: 30314  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48749, rend_intergenic: 39887  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56834, rend_intergenic: 51620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59140, rend_intergenic: 57745  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83321, rend_intergenic: 66054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100106, rend_intergenic: 95228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136608, rend_intergenic: 129865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142136, rend_intergenic: 140814  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152515, rend_intergenic: 147030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 198215, rend_intergenic: 194457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211184, rend_intergenic: 202167  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235174, rend_intergenic: 232292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 244117, rend_intergenic: 236233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support