-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_16750868-16863707

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_28553-T1
Valid prediction for snap_scaffold_11-snap.3426-T1
Valid prediction for snap_scaffold_11-snap.3420-T1
Valid prediction for Augustus_model.g18906.t1
Valid prediction for GlimmerHMM_glimmerT_28550-T1
Valid prediction for snap_scaffold_11-snap.3423-T1
Valid prediction for GlimmerHMM_glimmerT_28540-T1
Valid prediction for Augustus_model.g18902.t1
Valid prediction for GlimmerHMM_glimmerT_28544-T1
Valid prediction for GlimmerHMM_glimmerT_28555-T1
Valid prediction for Augustus_model.g18901.t1
Valid prediction for snap_scaffold_11-snap.3421-T1
Valid prediction for snap_scaffold_11-snap.3416-T1
Valid prediction for snap_scaffold_11-snap.3422-T1
Valid prediction for GlimmerHMM_glimmerT_28548-T1
Valid prediction for GlimmerHMM_glimmerT_28546-T1
Valid prediction for snap_scaffold_11-snap.3432-T1
Valid prediction for snap_scaffold_11-snap.3430-T1
Valid prediction for snap_scaffold_11-snap.3418-T1
Valid prediction for GlimmerHMM_glimmerT_28543-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g18905.t1
Valid prediction for snap_scaffold_11-snap.3433-T1
Valid prediction for Augustus_model.g18903.t1
Valid prediction for snap_scaffold_11-snap.3429-T1
Valid prediction for snap_scaffold_11-snap.3427-T1
Valid prediction for snap_scaffold_11-snap.3424-T1
Couldn't classify 90052, 90702
Sorry, prediction pasa_asmbl_7239.p1 fails validation.
(CGC)	 CC	90052-90702	GA	AGG
Valid prediction for Augustus_model.g18900.t1
Valid prediction for GlimmerHMM_glimmerT_28554-T1
Valid prediction for GlimmerHMM_glimmerT_28545-T1
Valid prediction for Augustus_model.g18907.t1
Valid prediction for snap_scaffold_11-snap.3436-T1
Valid prediction for snap_scaffold_11-snap.3425-T1
Valid prediction for snap_scaffold_11-snap.3428-T1
Valid prediction for Augustus_model.g18899.t1
Valid prediction for snap_scaffold_11-snap.3415-T1
Valid prediction for snap_scaffold_11-snap.3414-T1
Valid prediction for GlimmerHMM_glimmerT_28551-T1
Valid prediction for snap_scaffold_11-snap.3435-T1
Valid prediction for GlimmerHMM_glimmerT_28556-T1
Valid prediction for snap_scaffold_11-snap.3412-T1
Valid prediction for GlimmerHMM_glimmerT_28549-T1
Valid prediction for Augustus_model.g18908.t1
Valid prediction for GlimmerHMM_glimmerT_28542-T1
Valid prediction for GlimmerHMM_glimmerT_28547-T1
Valid prediction for Augustus_model.g18904.t1
Valid prediction for GlimmerHMM_glimmerT_28552-T1
Valid prediction for GlimmerHMM_glimmerT_28541-T1
Valid prediction for snap_scaffold_11-snap.3434-T1
Valid prediction for snap_scaffold_11-snap.3417-T1
Valid prediction for snap_scaffold_11-snap.3431-T1
Valid prediction for snap_scaffold_11-snap.3419-T1
Valid prediction for snap_scaffold_11-snap.3413-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 32066, rend_intergenic: 29193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32205, rend_intergenic: 32072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33378, rend_intergenic: 32282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37066, rend_intergenic: 33915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46758, rend_intergenic: 38991  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76309, rend_intergenic: 64842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94038, rend_intergenic: 88392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 112840
-exon list size: 160


building trellis

0.6    
1.2    
1.9    
2.5    
3.1    
3.7    
4.3    
4.9    
5.6    
6.2    
6.8    
7.4    
8.0    
8.6    
9.3    
9.9    
10.5    
11.1    
11.7    
12.3    
13.0    
13.6    
14.2    
14.8    
15.4    
16.0    
16.7    
17.3    
17.9    
18.5    
19.1    
19.8    
20.4    
21.0    
21.6    
22.2    
22.8    
23.5    
24.1    
24.7    
25.3    
25.9    
26.5    
27.2    
27.8    
28.4    
29.0    
29.6    
30.2    
30.9    
31.5    
32.1    
32.7    
33.3    
34.0    
34.6    
35.2    
35.8    
36.4    
37.0    
37.7    
38.3    
38.9    
39.5    
40.1    
40.7    
41.4    
42.0    
42.6    
43.2    
43.8    
44.4    
45.1    
45.7    
46.3    
46.9    
47.5    
48.1    
48.8    
49.4    
50.0    
50.6    
51.2    
51.9    
52.5    
53.1    
53.7    
54.3    
54.9    
55.6    
56.2    
56.8    
57.4    
58.0    
58.6    
59.3    
59.9    
60.5    
61.1    
61.7    
62.3    
63.0    
63.6    
64.2    
64.8    
65.4    
66.0    
66.7    
67.3    
67.9    
68.5    
69.1    
69.8    
70.4    
71.0    
71.6    
72.2    
72.8    
73.5    
74.1    
74.7    
75.3    
75.9    
76.5    
77.2    
77.8    
78.4    
79.0    
79.6    
80.2    
80.9    
81.5    
82.1    
82.7    
83.3    
84.0    
84.6    
85.2    
85.8    
86.4    
87.0    
87.7    
88.3    
88.9    
89.5    
90.1    
90.7    
91.4    
92.0    
92.6    
93.2    
93.8    
94.4    
95.1    
95.7    
96.3    
96.9    
97.5    
98.1    
98.8    
99.4    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 32066, rend_intergenic: 29193  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32205, rend_intergenic: 32072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33378, rend_intergenic: 32282  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37066, rend_intergenic: 33915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46758, rend_intergenic: 38991  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76309, rend_intergenic: 64842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94038, rend_intergenic: 88392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 97564 - 112840
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 99795 - 112840
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support