-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_1639426-1778539

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_11-snap.435-T1
Valid prediction for snap_scaffold_11-snap.408-T1
Valid prediction for GlimmerHMM_glimmerT_26562-T1
Valid prediction for GlimmerHMM_glimmerT_26553-T1
Valid prediction for snap_scaffold_11-snap.416-T1
Valid prediction for GlimmerHMM_glimmerT_26560-T1
Valid prediction for snap_scaffold_11-snap.410-T1
Valid prediction for GlimmerHMM_glimmerT_26556-T1
Valid prediction for GlimmerHMM_glimmerT_26555-T1
Valid prediction for snap_scaffold_11-snap.418-T1
Valid prediction for snap_scaffold_11-snap.432-T1
Valid prediction for snap_scaffold_11-snap.434-T1
Valid prediction for Augustus_model.g17585.t1
Valid prediction for snap_scaffold_11-snap.428-T1
Valid prediction for snap_scaffold_11-snap.423-T1
Valid prediction for snap_scaffold_11-snap.431-T1
Valid prediction for snap_scaffold_11-snap.406-T1
Valid prediction for GlimmerHMM_glimmerT_26551-T1
Valid prediction for snap_scaffold_11-snap.413-T1
Valid prediction for Augustus_model.g17587.t1
Valid prediction for snap_scaffold_11-snap.405-T1
Valid prediction for snap_scaffold_11-snap.403-T1
Valid prediction for snap_scaffold_11-snap.400-T1
Valid prediction for snap_scaffold_11-snap.425-T1
Valid prediction for snap_scaffold_11-snap.424-T1
Valid prediction for snap_scaffold_11-snap.421-T1
Valid prediction for GlimmerHMM_glimmerT_26557-T1
Valid prediction for Augustus_model.g17586.t1
Valid prediction for snap_scaffold_11-snap.426-T1
Valid prediction for GlimmerHMM_glimmerT_26563-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.401-T1
Valid prediction for Augustus_model.g17590.t1
Valid prediction for Augustus_model.g17593.t1
Valid prediction for snap_scaffold_11-snap.427-T1
Valid prediction for snap_scaffold_11-snap.409-T1
Valid prediction for snap_scaffold_11-snap.422-T1
Valid prediction for Augustus_model.g17591.t1
Valid prediction for snap_scaffold_11-snap.419-T1
Valid prediction for GlimmerHMM_glimmerT_26554-T1
Valid prediction for snap_scaffold_11-snap.429-T1
Valid prediction for snap_scaffold_11-snap.411-T1
Valid prediction for snap_scaffold_11-snap.430-T1
Valid prediction for snap_scaffold_11-snap.412-T1
Valid prediction for GlimmerHMM_glimmerT_26566-T1
Valid prediction for GlimmerHMM_glimmerT_26559-T1
Valid prediction for GlimmerHMM_glimmerT_26565-T1
Valid prediction for GlimmerHMM_glimmerT_26561-T1
Valid prediction for GlimmerHMM_glimmerT_26558-T1
Valid prediction for GlimmerHMM_glimmerT_26552-T1
Valid prediction for GlimmerHMM_glimmerT_26567-T1
Valid prediction for snap_scaffold_11-snap.417-T1
Valid prediction for GlimmerHMM_glimmerT_26564-T1
Valid prediction for snap_scaffold_11-snap.433-T1
Valid prediction for snap_scaffold_11-snap.420-T1
Valid prediction for snap_scaffold_11-snap.414-T1
Valid prediction for snap_scaffold_11-snap.404-T1
Valid prediction for Augustus_model.g17588.t1
Valid prediction for Augustus_model.g17589.t1
Valid prediction for snap_scaffold_11-snap.407-T1
Valid prediction for snap_scaffold_11-snap.415-T1
Valid prediction for snap_scaffold_11-snap.436-T1
Valid prediction for snap_scaffold_11-snap.402-T1
Valid prediction for Augustus_model.g17592.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7284, rend_intergenic: 5793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20852, rend_intergenic: 16822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34997, rend_intergenic: 23664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40268, rend_intergenic: 36115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41415, rend_intergenic: 40376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44354, rend_intergenic: 42107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48866, rend_intergenic: 44994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58788, rend_intergenic: 54566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65860, rend_intergenic: 62255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68706, rend_intergenic: 68347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74977, rend_intergenic: 73464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79258, rend_intergenic: 78752  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101409, rend_intergenic: 80395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111414, rend_intergenic: 108233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111622, rend_intergenic: 111509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115343, rend_intergenic: 111994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119715, rend_intergenic: 115929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132967, rend_intergenic: 130089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133253, rend_intergenic: 133015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 139114
-exon list size: 240


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.7    
4.1    
4.5    
5.0    
5.4    
5.8    
6.2    
6.6    
7.0    
7.4    
7.9    
8.3    
8.7    
9.1    
9.5    
9.9    
10.3    
10.7    
11.2    
11.6    
12.0    
12.4    
12.8    
13.2    
13.6    
14.0    
14.5    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.4    
17.8    
18.2    
18.6    
19.0    
19.4    
19.8    
20.2    
20.7    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.9    
27.3    
27.7    
28.1    
28.5    
28.9    
29.3    
29.8    
30.2    
30.6    
31.0    
31.4    
31.8    
32.2    
32.6    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
36.0    
36.4    
36.8    
37.2    
37.6    
38.0    
38.4    
38.8    
39.3    
39.7    
40.1    
40.5    
40.9    
41.3    
41.7    
42.1    
42.6    
43.0    
43.4    
43.8    
44.2    
44.6    
45.0    
45.5    
45.9    
46.3    
46.7    
47.1    
47.5    
47.9    
48.3    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.7    
52.1    
52.5    
52.9    
53.3    
53.7    
54.1    
54.5    
55.0    
55.4    
55.8    
56.2    
56.6    
57.0    
57.4    
57.9    
58.3    
58.7    
59.1    
59.5    
59.9    
60.3    
60.7    
61.2    
61.6    
62.0    
62.4    
62.8    
63.2    
63.6    
64.0    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.4    
67.8    
68.2    
68.6    
69.0    
69.4    
69.8    
70.2    
70.7    
71.1    
71.5    
71.9    
72.3    
72.7    
73.1    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.8    
80.2    
80.6    
81.0    
81.4    
81.8    
82.2    
82.6    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.5    
86.0    
86.4    
86.8    
87.2    
87.6    
88.0    
88.4    
88.8    
89.3    
89.7    
90.1    
90.5    
90.9    
91.3    
91.7    
92.1    
92.6    
93.0    
93.4    
93.8    
94.2    
94.6    
95.0    
95.5    
95.9    
96.3    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 7284, rend_intergenic: 5793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20852, rend_intergenic: 16822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34997, rend_intergenic: 23664  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40268, rend_intergenic: 36115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41415, rend_intergenic: 40376  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44354, rend_intergenic: 42107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48866, rend_intergenic: 44994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58788, rend_intergenic: 54566  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65860, rend_intergenic: 62255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68706, rend_intergenic: 68347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74977, rend_intergenic: 73464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79258, rend_intergenic: 78752  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101409, rend_intergenic: 80395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111414, rend_intergenic: 108233  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111622, rend_intergenic: 111509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115343, rend_intergenic: 111994  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119715, rend_intergenic: 115929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132967, rend_intergenic: 130089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133253, rend_intergenic: 133015  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 118904 - 139114
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 118904 - 130776
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 118904 - 130585
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 119716 - 130585
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support