-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_16056427-16257462

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_28465-T1
Valid prediction for snap_scaffold_11-snap.3271-T1
Valid prediction for GlimmerHMM_glimmerT_28477-T1
Valid prediction for GlimmerHMM_glimmerT_28454-T1
Valid prediction for GlimmerHMM_glimmerT_28460-T1
Valid prediction for snap_scaffold_11-snap.3288-T1
Valid prediction for snap_scaffold_11-snap.3280-T1
Valid prediction for GlimmerHMM_glimmerT_28474-T1
Valid prediction for GlimmerHMM_glimmerT_28471-T1
Valid prediction for snap_scaffold_11-snap.3277-T1
Valid prediction for Augustus_model.g18851.t1
Valid prediction for snap_scaffold_11-snap.3301-T1
Valid prediction for GlimmerHMM_glimmerT_28455-T1
Valid prediction for Augustus_model.g18845.t1
Valid prediction for GlimmerHMM_glimmerT_28478-T1
Valid prediction for Augustus_model.g18855.t1
Valid prediction for Augustus_model.g18849.t1
Valid prediction for snap_scaffold_11-snap.3281-T1
Valid prediction for Augustus_model.g18860.t1
Valid prediction for snap_scaffold_11-snap.3309-T1
Valid prediction for snap_scaffold_11-snap.3274-T1
Valid prediction for snap_scaffold_11-snap.3313-T1
Valid prediction for snap_scaffold_11-snap.3298-T1
Valid prediction for GlimmerHMM_glimmerT_28470-T1
Valid prediction for snap_scaffold_11-snap.3287-T1
Valid prediction for GlimmerHMM_glimmerT_28480-T1
Valid prediction for snap_scaffold_11-snap.3303-T1
Valid prediction for snap_scaffold_11-snap.3307-T1
Valid prediction for GlimmerHMM_glimmerT_28468-T1
Valid prediction for snap_scaffold_11-snap.3293-T1
Valid prediction for snap_scaffold_11-snap.3316-T1
Valid prediction for GlimmerHMM_glimmerT_28462-T1
Valid prediction for snap_scaffold_11-snap.3291-T1
Valid prediction for snap_scaffold_11-snap.3311-T1
Valid prediction for GlimmerHMM_glimmerT_28461-T1
Valid prediction for snap_scaffold_11-snap.3278-T1
Valid prediction for snap_scaffold_11-snap.3286-T1
Valid prediction for snap_scaffold_11-snap.3296-T1
Valid prediction for snap_scaffold_11-snap.3283-T1
Valid prediction for snap_scaffold_11-snap.3276-T1
Valid prediction for GlimmerHMM_glimmerT_28463-T1
Valid prediction for Augustus_model.g18858.t1
Valid prediction for snap_scaffold_11-snap.3270-T1
Valid prediction for GlimmerHMM_glimmerT_28472-T1
Valid prediction for snap_scaffold_11-snap.3268-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.3315-T1
Valid prediction for Augustus_model.g18850.t1
Valid prediction for GlimmerHMM_glimmerT_28457-T1
Valid prediction for GlimmerHMM_glimmerT_28464-T1
Valid prediction for GlimmerHMM_glimmerT_28476-T1
Valid prediction for Augustus_model.g18856.t1
Valid prediction for snap_scaffold_11-snap.3267-T1
Valid prediction for snap_scaffold_11-snap.3290-T1
Valid prediction for Augustus_model.g18854.t1
Valid prediction for Augustus_model.g18844.t1
Valid prediction for Augustus_model.g18857.t1
Valid prediction for snap_scaffold_11-snap.3304-T1
Valid prediction for snap_scaffold_11-snap.3275-T1
Valid prediction for Augustus_model.g18846.t1
Valid prediction for GlimmerHMM_glimmerT_28466-T1
Valid prediction for snap_scaffold_11-snap.3297-T1
Valid prediction for snap_scaffold_11-snap.3310-T1
Valid prediction for snap_scaffold_11-snap.3265-T1
Valid prediction for GlimmerHMM_glimmerT_28458-T1
Valid prediction for snap_scaffold_11-snap.3294-T1
Valid prediction for GlimmerHMM_glimmerT_28469-T1
Valid prediction for snap_scaffold_11-snap.3317-T1
Valid prediction for GlimmerHMM_glimmerT_28459-T1
Valid prediction for snap_scaffold_11-snap.3314-T1
Valid prediction for snap_scaffold_11-snap.3273-T1
Valid prediction for snap_scaffold_11-snap.3272-T1
Valid prediction for GlimmerHMM_glimmerT_28473-T1
Valid prediction for Augustus_model.g18861.t1
Valid prediction for snap_scaffold_11-snap.3284-T1
Valid prediction for GlimmerHMM_glimmerT_28481-T1
Valid prediction for snap_scaffold_11-snap.3269-T1
Valid prediction for snap_scaffold_11-snap.3266-T1
Valid prediction for snap_scaffold_11-snap.3305-T1
Valid prediction for snap_scaffold_11-snap.3306-T1
Valid prediction for GlimmerHMM_glimmerT_28475-T1
Valid prediction for snap_scaffold_11-snap.3285-T1
Valid prediction for snap_scaffold_11-snap.3299-T1
Valid prediction for snap_scaffold_11-snap.3289-T1
Valid prediction for Augustus_model.g18859.t1
Valid prediction for Augustus_model.g18848.t1
Valid prediction for snap_scaffold_11-snap.3302-T1
Valid prediction for snap_scaffold_11-snap.3308-T1
Valid prediction for snap_scaffold_11-snap.3295-T1
Valid prediction for snap_scaffold_11-snap.3300-T1
Valid prediction for Augustus_model.g18847.t1
Valid prediction for Augustus_model.g18852.t1
Valid prediction for snap_scaffold_11-snap.3279-T1
Valid prediction for Augustus_model.g18853.t1
Valid prediction for snap_scaffold_11-snap.3282-T1
Valid prediction for GlimmerHMM_glimmerT_28467-T1
Valid prediction for snap_scaffold_11-snap.3318-T1
Valid prediction for GlimmerHMM_glimmerT_28479-T1
Valid prediction for GlimmerHMM_glimmerT_28456-T1
Valid prediction for snap_scaffold_11-snap.3292-T1
Valid prediction for snap_scaffold_11-snap.3312-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18784, rend_intergenic: 16537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20734, rend_intergenic: 18804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25515, rend_intergenic: 23725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29711, rend_intergenic: 26710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38014, rend_intergenic: 34442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44345, rend_intergenic: 43418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53818, rend_intergenic: 44890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59930, rend_intergenic: 55320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82674, rend_intergenic: 70014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98858, rend_intergenic: 97014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100746, rend_intergenic: 99428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109981, rend_intergenic: 106180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110529, rend_intergenic: 110260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113122, rend_intergenic: 111366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129286, rend_intergenic: 129261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149947, rend_intergenic: 143967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158307, rend_intergenic: 154274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 201036
-exon list size: 311


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.6    
2.9    
3.2    
3.5    
3.8    
4.2    
4.5    
4.8    
5.1    
5.4    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.6    
8.9    
9.3    
9.6    
9.9    
10.2    
10.5    
10.9    
11.2    
11.5    
11.8    
12.1    
12.5    
12.8    
13.1    
13.4    
13.7    
14.1    
14.4    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.6    
16.9    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.2    
19.5    
19.8    
20.1    
20.4    
20.8    
21.1    
21.4    
21.7    
22.0    
22.4    
22.7    
23.0    
23.3    
23.6    
24.0    
24.3    
24.6    
24.9    
25.2    
25.6    
25.9    
26.2    
26.5    
26.8    
27.2    
27.5    
27.8    
28.1    
28.4    
28.8    
29.1    
29.4    
29.7    
30.0    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.3    
32.6    
32.9    
33.2    
33.5    
33.9    
34.2    
34.5    
34.8    
35.1    
35.5    
35.8    
36.1    
36.4    
36.7    
37.1    
37.4    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.2    
41.5    
41.9    
42.2    
42.5    
42.8    
43.1    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.4    
45.7    
46.0    
46.3    
46.6    
47.0    
47.3    
47.6    
47.9    
48.2    
48.6    
48.9    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.1    
51.4    
51.8    
52.1    
52.4    
52.7    
53.0    
53.4    
53.7    
54.0    
54.3    
54.6    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.9    
57.2    
57.5    
57.8    
58.1    
58.5    
58.8    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.6    
62.9    
63.3    
63.6    
63.9    
64.2    
64.5    
64.9    
65.2    
65.5    
65.8    
66.1    
66.5    
66.8    
67.1    
67.4    
67.7    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
70.0    
70.3    
70.6    
70.9    
71.2    
71.6    
71.9    
72.2    
72.5    
72.8    
73.2    
73.5    
73.8    
74.1    
74.4    
74.8    
75.1    
75.4    
75.7    
76.0    
76.4    
76.7    
77.0    
77.3    
77.6    
78.0    
78.3    
78.6    
78.9    
79.2    
79.6    
79.9    
80.2    
80.5    
80.8    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.1    
83.4    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.6    
85.9    
86.3    
86.6    
86.9    
87.2    
87.5    
87.9    
88.2    
88.5    
88.8    
89.1    
89.5    
89.8    
90.1    
90.4    
90.7    
91.1    
91.4    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.6    
94.9    
95.2    
95.5    
95.8    
96.2    
96.5    
96.8    
97.1    
97.4    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 18784, rend_intergenic: 16537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20734, rend_intergenic: 18804  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25515, rend_intergenic: 23725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29711, rend_intergenic: 26710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38014, rend_intergenic: 34442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44345, rend_intergenic: 43418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53818, rend_intergenic: 44890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59930, rend_intergenic: 55320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82674, rend_intergenic: 70014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98858, rend_intergenic: 97014  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100746, rend_intergenic: 99428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109981, rend_intergenic: 106180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110529, rend_intergenic: 110260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113122, rend_intergenic: 111366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129286, rend_intergenic: 129261  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149947, rend_intergenic: 143967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158307, rend_intergenic: 154274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support