-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_15918519-16058275

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_28434-T1
Valid prediction for snap_scaffold_11-snap.3262-T1
Valid prediction for HiQ_model.g18842.t1
Valid prediction for GlimmerHMM_glimmerT_28453-T1
Valid prediction for snap_scaffold_11-snap.3235-T1
Valid prediction for snap_scaffold_11-snap.3240-T1
Valid prediction for GlimmerHMM_glimmerT_28441-T1
Valid prediction for snap_scaffold_11-snap.3237-T1
Valid prediction for snap_scaffold_11-snap.3241-T1
Valid prediction for snap_scaffold_11-snap.3245-T1
Valid prediction for snap_scaffold_11-snap.3259-T1
Valid prediction for snap_scaffold_11-snap.3253-T1
Valid prediction for GlimmerHMM_glimmerT_28440-T1
Valid prediction for GlimmerHMM_glimmerT_28445-T1
Valid prediction for Augustus_model.g18843.t1
Valid prediction for GlimmerHMM_glimmerT_28448-T1
Valid prediction for GlimmerHMM_glimmerT_28442-T1
Valid prediction for snap_scaffold_11-snap.3263-T1
Valid prediction for snap_scaffold_11-snap.3256-T1
Valid prediction for snap_scaffold_11-snap.3252-T1
Valid prediction for GlimmerHMM_glimmerT_28446-T1
Valid prediction for snap_scaffold_11-snap.3233-T1
Valid prediction for GlimmerHMM_glimmerT_28452-T1
Valid prediction for snap_scaffold_11-snap.3248-T1
Valid prediction for Augustus_model.g18839.t1
Valid prediction for snap_scaffold_11-snap.3238-T1
Valid prediction for pasa_asmbl_6140.p1
Valid prediction for snap_scaffold_11-snap.3243-T1
Valid prediction for GlimmerHMM_glimmerT_28439-T1
Valid prediction for CodingQuarry_transcript_8333-T1
Valid prediction for GlimmerHMM_glimmerT_28443-T1
Valid prediction for snap_scaffold_11-snap.3254-T1
Valid prediction for GlimmerHMM_glimmerT_28450-T1
Valid prediction for Augustus_model.g18838.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.3258-T1
Valid prediction for GlimmerHMM_glimmerT_28436-T1
Valid prediction for Augustus_model.g18840.t1
Valid prediction for snap_scaffold_11-snap.3264-T1
Valid prediction for GlimmerHMM_glimmerT_28451-T1
Valid prediction for pasa_asmbl_7219.p1
Valid prediction for snap_scaffold_11-snap.3234-T1
Valid prediction for GlimmerHMM_glimmerT_28447-T1
Valid prediction for snap_scaffold_11-snap.3246-T1
Valid prediction for GlimmerHMM_glimmerT_28444-T1
Valid prediction for snap_scaffold_11-snap.3239-T1
Valid prediction for snap_scaffold_11-snap.3236-T1
Valid prediction for snap_scaffold_11-snap.3251-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_11-snap.3247-T1
Valid prediction for snap_scaffold_11-snap.3255-T1
Valid prediction for snap_scaffold_11-snap.3231-T1
Valid prediction for snap_scaffold_11-snap.3232-T1
Valid prediction for Augustus_model.g18836.t1
Valid prediction for snap_scaffold_11-snap.3249-T1
Valid prediction for snap_scaffold_11-snap.3260-T1
Valid prediction for CodingQuarry_transcript_8332-T1
Valid prediction for GlimmerHMM_glimmerT_28449-T1
Valid prediction for snap_scaffold_11-snap.3261-T1
Valid prediction for GlimmerHMM_glimmerT_28435-T1
Valid prediction for Augustus_model.g18835.t1
Valid prediction for snap_scaffold_11-snap.3250-T1
Valid prediction for GlimmerHMM_glimmerT_28437-T1
Valid prediction for Augustus_model.g18837.t1
Valid prediction for snap_scaffold_11-snap.3244-T1
Valid prediction for GlimmerHMM_glimmerT_28438-T1
Valid prediction for snap_scaffold_11-snap.3257-T1
Valid prediction for Augustus_model.g18841.t1
Valid prediction for snap_scaffold_11-snap.3242-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16904, rend_intergenic: 9941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40038, rend_intergenic: 31227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43638, rend_intergenic: 41965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48151, rend_intergenic: 45270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58307, rend_intergenic: 53427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66391, rend_intergenic: 60051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100416, rend_intergenic: 77433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109517, rend_intergenic: 106366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123016, rend_intergenic: 116126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133543, rend_intergenic: 128436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 139757
-exon list size: 232


building trellis

0.4    
0.9    
1.3    
1.7    
2.1    
2.6    
3.0    
3.4    
3.8    
4.3    
4.7    
5.1    
5.6    
6.0    
6.4    
6.8    
7.3    
7.7    
8.1    
8.5    
9.0    
9.4    
9.8    
10.3    
10.7    
11.1    
11.5    
12.0    
12.4    
12.8    
13.2    
13.7    
14.1    
14.5    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.4    
18.8    
19.2    
19.7    
20.1    
20.5    
20.9    
21.4    
21.8    
22.2    
22.6    
23.1    
23.5    
23.9    
24.4    
24.8    
25.2    
25.6    
26.1    
26.5    
26.9    
27.4    
27.8    
28.2    
28.6    
29.1    
29.5    
29.9    
30.3    
30.8    
31.2    
31.6    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.5    
35.9    
36.3    
36.8    
37.2    
37.6    
38.0    
38.5    
38.9    
39.3    
39.7    
40.2    
40.6    
41.0    
41.5    
41.9    
42.3    
42.7    
43.2    
43.6    
44.0    
44.4    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.9    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.1    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.6    
56.0    
56.4    
56.8    
57.3    
57.7    
58.1    
58.5    
59.0    
59.4    
59.8    
60.3    
60.7    
61.1    
61.5    
62.0    
62.4    
62.8    
63.2    
63.7    
64.1    
64.5    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.4    
68.8    
69.2    
69.7    
70.1    
70.5    
70.9    
71.4    
71.8    
72.2    
72.6    
73.1    
73.5    
73.9    
74.4    
74.8    
75.2    
75.6    
76.1    
76.5    
76.9    
77.4    
77.8    
78.2    
78.6    
79.1    
79.5    
79.9    
80.3    
80.8    
81.2    
81.6    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.5    
85.9    
86.3    
86.8    
87.2    
87.6    
88.0    
88.5    
88.9    
89.3    
89.7    
90.2    
90.6    
91.0    
91.5    
91.9    
92.3    
92.7    
93.2    
93.6    
94.0    
94.4    
94.9    
95.3    
95.7    
96.2    
96.6    
97.0    
97.4    
97.9    
98.3    
98.7    
99.1    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 16904, rend_intergenic: 9941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40038, rend_intergenic: 31227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43638, rend_intergenic: 41965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48151, rend_intergenic: 45270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58307, rend_intergenic: 53427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66391, rend_intergenic: 60051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100416, rend_intergenic: 77433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109517, rend_intergenic: 106366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123016, rend_intergenic: 116126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133543, rend_intergenic: 128436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support