-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_12495782-12624616

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g18581.t1
Valid prediction for snap_scaffold_11-snap.2669-T1
Valid prediction for snap_scaffold_11-snap.2684-T1
Valid prediction for GlimmerHMM_glimmerT_28056-T1
Valid prediction for GlimmerHMM_glimmerT_28053-T1
Valid prediction for GlimmerHMM_glimmerT_28045-T1
Valid prediction for snap_scaffold_11-snap.2682-T1
Valid prediction for Augustus_model.g18591.t1
Valid prediction for Augustus_model.g18589.t1
Valid prediction for snap_scaffold_11-snap.2678-T1
Valid prediction for Augustus_model.g18587.t1
Valid prediction for snap_scaffold_11-snap.2671-T1
Valid prediction for snap_scaffold_11-snap.2668-T1
Valid prediction for snap_scaffold_11-snap.2675-T1
Valid prediction for GlimmerHMM_glimmerT_28047-T1
Valid prediction for GlimmerHMM_glimmerT_28064-T1
Valid prediction for snap_scaffold_11-snap.2660-T1
Valid prediction for snap_scaffold_11-snap.2664-T1
Valid prediction for GlimmerHMM_glimmerT_28059-T1
Valid prediction for snap_scaffold_11-snap.2670-T1
Valid prediction for GlimmerHMM_glimmerT_28058-T1
Valid prediction for GlimmerHMM_glimmerT_28055-T1
Valid prediction for GlimmerHMM_glimmerT_28050-T1
Valid prediction for GlimmerHMM_glimmerT_28061-T1
Valid prediction for GlimmerHMM_glimmerT_28043-T1
Valid prediction for GlimmerHMM_glimmerT_28054-T1
Valid prediction for snap_scaffold_11-snap.2658-T1
Valid prediction for Augustus_model.g18580.t1
Valid prediction for snap_scaffold_11-snap.2674-T1
Valid prediction for snap_scaffold_11-snap.2677-T1
Valid prediction for snap_scaffold_11-snap.2685-T1
Valid prediction for snap_scaffold_11-snap.2666-T1
Valid prediction for snap_scaffold_11-snap.2665-T1
Valid prediction for snap_scaffold_11-snap.2673-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.2659-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_11-snap.2687-T1
Valid prediction for snap_scaffold_11-snap.2688-T1
Valid prediction for snap_scaffold_11-snap.2683-T1
Valid prediction for snap_scaffold_11-snap.2679-T1
Valid prediction for GlimmerHMM_glimmerT_28057-T1
Valid prediction for GlimmerHMM_glimmerT_28060-T1
Valid prediction for GlimmerHMM_glimmerT_28046-T1
Valid prediction for Augustus_model.g18586.t1
Valid prediction for snap_scaffold_11-snap.2667-T1
Valid prediction for GlimmerHMM_glimmerT_28042-T1
Valid prediction for Augustus_model.g18584.t1
Valid prediction for GlimmerHMM_glimmerT_28048-T1
Valid prediction for snap_scaffold_11-snap.2672-T1
Valid prediction for snap_scaffold_11-snap.2663-T1
Valid prediction for GlimmerHMM_glimmerT_28044-T1
Valid prediction for snap_scaffold_11-snap.2689-T1
Valid prediction for snap_scaffold_11-snap.2662-T1
Valid prediction for Augustus_model.g18582.t1
Valid prediction for Augustus_model.g18590.t1
Valid prediction for Augustus_model.g18583.t1
Valid prediction for GlimmerHMM_glimmerT_28062-T1
Valid prediction for Augustus_model.g18588.t1
Valid prediction for GlimmerHMM_glimmerT_28065-T1
Valid prediction for GlimmerHMM_glimmerT_28063-T1
Valid prediction for Augustus_model.g18585.t1
Valid prediction for snap_scaffold_11-snap.2676-T1
Valid prediction for GlimmerHMM_glimmerT_28049-T1
Valid prediction for snap_scaffold_11-snap.2661-T1
Valid prediction for snap_scaffold_11-snap.2681-T1
Valid prediction for Augustus_model.g18578.t1
Valid prediction for GlimmerHMM_glimmerT_28052-T1
Valid prediction for GlimmerHMM_glimmerT_28051-T1
Valid prediction for Augustus_model.g18579.t1
Valid prediction for snap_scaffold_11-snap.2680-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16368, rend_intergenic: 9884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19072, rend_intergenic: 18032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33295, rend_intergenic: 25799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50819, rend_intergenic: 50009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55130, rend_intergenic: 51756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82308, rend_intergenic: 73614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 128835
-exon list size: 226


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.6    
3.1    
3.5    
3.9    
4.4    
4.8    
5.3    
5.7    
6.1    
6.6    
7.0    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.1    
10.5    
11.0    
11.4    
11.8    
12.3    
12.7    
13.2    
13.6    
14.0    
14.5    
14.9    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
18.0    
18.4    
18.9    
19.3    
19.7    
20.2    
20.6    
21.1    
21.5    
21.9    
22.4    
22.8    
23.2    
23.7    
24.1    
24.6    
25.0    
25.4    
25.9    
26.3    
26.8    
27.2    
27.6    
28.1    
28.5    
28.9    
29.4    
29.8    
30.3    
30.7    
31.1    
31.6    
32.0    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.1    
35.5    
36.0    
36.4    
36.8    
37.3    
37.7    
38.2    
38.6    
39.0    
39.5    
39.9    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
43.0    
43.4    
43.9    
44.3    
44.7    
45.2    
45.6    
46.1    
46.5    
46.9    
47.4    
47.8    
48.2    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.8    
52.2    
52.6    
53.1    
53.5    
53.9    
54.4    
54.8    
55.3    
55.7    
56.1    
56.6    
57.0    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.1    
60.5    
61.0    
61.4    
61.8    
62.3    
62.7    
63.2    
63.6    
64.0    
64.5    
64.9    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
68.0    
68.4    
68.9    
69.3    
69.7    
70.2    
70.6    
71.1    
71.5    
71.9    
72.4    
72.8    
73.2    
73.7    
74.1    
74.6    
75.0    
75.4    
75.9    
76.3    
76.8    
77.2    
77.6    
78.1    
78.5    
78.9    
79.4    
79.8    
80.3    
80.7    
81.1    
81.6    
82.0    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.1    
85.5    
86.0    
86.4    
86.8    
87.3    
87.7    
88.2    
88.6    
89.0    
89.5    
89.9    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
93.0    
93.4    
93.9    
94.3    
94.7    
95.2    
95.6    
96.1    
96.5    
96.9    
97.4    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 16368, rend_intergenic: 9884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19072, rend_intergenic: 18032  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33295, rend_intergenic: 25799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50819, rend_intergenic: 50009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55130, rend_intergenic: 51756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82308, rend_intergenic: 73614  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support