-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_1184409-1307578

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_11-snap.297-T1
Valid prediction for snap_scaffold_11-snap.298-T1
Valid prediction for snap_scaffold_11-snap.273-T1
Valid prediction for Augustus_model.g17553.t1
Valid prediction for Augustus_model.g17547.t1
Valid prediction for Augustus_model.g17550.t1
Valid prediction for Augustus_model.g17545.t1
Valid prediction for GlimmerHMM_glimmerT_26478-T1
Valid prediction for snap_scaffold_11-snap.295-T1
Valid prediction for Augustus_model.g17548.t1
Valid prediction for snap_scaffold_11-snap.287-T1
Valid prediction for GlimmerHMM_glimmerT_26484-T1
Valid prediction for Augustus_model.g17549.t1
Valid prediction for GlimmerHMM_glimmerT_26477-T1
Valid prediction for snap_scaffold_11-snap.282-T1
Valid prediction for snap_scaffold_11-snap.271-T1
Valid prediction for snap_scaffold_11-snap.277-T1
Valid prediction for GlimmerHMM_glimmerT_26489-T1
Valid prediction for snap_scaffold_11-snap.302-T1
Valid prediction for snap_scaffold_11-snap.278-T1
Valid prediction for Augustus_model.g17546.t1
Valid prediction for snap_scaffold_11-snap.285-T1
Valid prediction for Augustus_model.g17544.t1
Valid prediction for GlimmerHMM_glimmerT_26480-T1
Valid prediction for GlimmerHMM_glimmerT_26483-T1
Valid prediction for GlimmerHMM_glimmerT_26487-T1
Valid prediction for snap_scaffold_11-snap.293-T1
Valid prediction for GlimmerHMM_glimmerT_26485-T1
Valid prediction for snap_scaffold_11-snap.299-T1
Valid prediction for GlimmerHMM_glimmerT_26482-T1
Valid prediction for snap_scaffold_11-snap.280-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.301-T1
Valid prediction for pasa_asmbl_6420.p1
Valid prediction for HiQ_model.g17556.t1
Valid prediction for snap_scaffold_11-snap.281-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_11-snap.274-T1
Valid prediction for GlimmerHMM_glimmerT_26491-T1
Valid prediction for Augustus_model.g17551.t1
Valid prediction for snap_scaffold_11-snap.272-T1
Valid prediction for snap_scaffold_11-snap.275-T1
Valid prediction for snap_scaffold_11-snap.279-T1
Valid prediction for Augustus_model.g17543.t1
Valid prediction for GlimmerHMM_glimmerT_26488-T1
Valid prediction for snap_scaffold_11-snap.284-T1
Valid prediction for snap_scaffold_11-snap.276-T1
Valid prediction for snap_scaffold_11-snap.283-T1
Valid prediction for snap_scaffold_11-snap.291-T1
Valid prediction for snap_scaffold_11-snap.270-T1
Valid prediction for CodingQuarry_transcript_7968-T1
Valid prediction for snap_scaffold_11-snap.296-T1
Valid prediction for GlimmerHMM_glimmerT_26490-T1
Valid prediction for GlimmerHMM_glimmerT_26486-T1
Valid prediction for GlimmerHMM_glimmerT_26492-T1
Valid prediction for GlimmerHMM_glimmerT_26476-T1
Valid prediction for HiQ_model.g17555.t1
Valid prediction for GlimmerHMM_glimmerT_26479-T1
Valid prediction for GlimmerHMM_glimmerT_26481-T1
Valid prediction for snap_scaffold_11-snap.288-T1
Valid prediction for snap_scaffold_11-snap.294-T1
Valid prediction for CodingQuarry_transcript_7969-T1
Valid prediction for snap_scaffold_11-snap.300-T1
Valid prediction for snap_scaffold_11-snap.303-T1
Valid prediction for CodingQuarry_transcript_7970-T1
Valid prediction for HiQ_model.g17554.t1
Valid prediction for snap_scaffold_11-snap.289-T1
Valid prediction for snap_scaffold_11-snap.292-T1
Valid prediction for Augustus_model.g17552.t1
Valid prediction for pasa_asmbl_6427.p1
Valid prediction for snap_scaffold_11-snap.286-T1
Valid prediction for snap_scaffold_11-snap.290-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5642, rend_intergenic: 4937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15084, rend_intergenic: 7826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27591, rend_intergenic: 16848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34508, rend_intergenic: 31164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37025, rend_intergenic: 34571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39875, rend_intergenic: 39039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52989, rend_intergenic: 49544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71444, rend_intergenic: 55557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90450, rend_intergenic: 82520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91437, rend_intergenic: 90658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93620, rend_intergenic: 92668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96968, rend_intergenic: 93625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105858, rend_intergenic: 100147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 123170
-exon list size: 258


building trellis

0.4    
0.8    
1.2    
1.5    
1.9    
2.3    
2.7    
3.1    
3.5    
3.8    
4.2    
4.6    
5.0    
5.4    
5.8    
6.2    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.8    
9.2    
9.6    
10.0    
10.4    
10.8    
11.2    
11.5    
11.9    
12.3    
12.7    
13.1    
13.5    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
20.0    
20.4    
20.8    
21.2    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.5    
26.9    
27.3    
27.7    
28.1    
28.5    
28.8    
29.2    
29.6    
30.0    
30.4    
30.8    
31.2    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
35.0    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.7    
38.1    
38.5    
38.8    
39.2    
39.6    
40.0    
40.4    
40.8    
41.2    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.8    
44.2    
44.6    
45.0    
45.4    
45.8    
46.2    
46.5    
46.9    
47.3    
47.7    
48.1    
48.5    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.5    
51.9    
52.3    
52.7    
53.1    
53.5    
53.8    
54.2    
54.6    
55.0    
55.4    
55.8    
56.2    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.8    
59.2    
59.6    
60.0    
60.4    
60.8    
61.2    
61.5    
61.9    
62.3    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
65.0    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
68.8    
69.2    
69.6    
70.0    
70.4    
70.8    
71.2    
71.5    
71.9    
72.3    
72.7    
73.1    
73.5    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.8    
79.2    
79.6    
80.0    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.5    
86.9    
87.3    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.4    
90.8    
91.2    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.8    
94.2    
94.6    
95.0    
95.4    
95.8    
96.2    
96.5    
96.9    
97.3    
97.7    
98.1    
98.5    
98.8    
99.2    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 5642, rend_intergenic: 4937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15084, rend_intergenic: 7826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27591, rend_intergenic: 16848  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34508, rend_intergenic: 31164  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37025, rend_intergenic: 34571  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39875, rend_intergenic: 39039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52989, rend_intergenic: 49544  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71444, rend_intergenic: 55557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90450, rend_intergenic: 82520  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91437, rend_intergenic: 90658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93620, rend_intergenic: 92668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96968, rend_intergenic: 93625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105858, rend_intergenic: 100147  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support