-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_11/scaffold_11_10488838-10659558

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g18436.t1
Valid prediction for GlimmerHMM_glimmerT_27838-T1
Valid prediction for Augustus_model.g18434.t1
Valid prediction for GlimmerHMM_glimmerT_27830-T1
Valid prediction for snap_scaffold_11-snap.2344-T1
Valid prediction for snap_scaffold_11-snap.2356-T1
Valid prediction for Augustus_model.g18429.t1
Valid prediction for Augustus_model.g18437.t1
Valid prediction for GlimmerHMM_glimmerT_27835-T1
Valid prediction for Augustus_model.g18438.t1
Valid prediction for snap_scaffold_11-snap.2331-T1
Valid prediction for GlimmerHMM_glimmerT_27820-T1
Valid prediction for snap_scaffold_11-snap.2362-T1
Valid prediction for GlimmerHMM_glimmerT_27831-T1
Valid prediction for snap_scaffold_11-snap.2350-T1
Valid prediction for Augustus_model.g18427.t1
Valid prediction for Augustus_model.g18430.t1
Valid prediction for GlimmerHMM_glimmerT_27825-T1
Valid prediction for Augustus_model.g18440.t1
Valid prediction for GlimmerHMM_glimmerT_27833-T1
Valid prediction for snap_scaffold_11-snap.2343-T1
Valid prediction for snap_scaffold_11-snap.2333-T1
Valid prediction for snap_scaffold_11-snap.2353-T1
Valid prediction for snap_scaffold_11-snap.2338-T1
Valid prediction for snap_scaffold_11-snap.2361-T1
Valid prediction for snap_scaffold_11-snap.2364-T1
Valid prediction for Augustus_model.g18439.t1
Valid prediction for snap_scaffold_11-snap.2357-T1
Valid prediction for snap_scaffold_11-snap.2345-T1
Valid prediction for snap_scaffold_11-snap.2346-T1
Valid prediction for Augustus_model.g18428.t1
Valid prediction for GlimmerHMM_glimmerT_27823-T1
Valid prediction for snap_scaffold_11-snap.2352-T1
Valid prediction for GlimmerHMM_glimmerT_27822-T1
Valid prediction for snap_scaffold_11-snap.2363-T1
Valid prediction for snap_scaffold_11-snap.2355-T1
Valid prediction for Augustus_model.g18431.t1
Valid prediction for snap_scaffold_11-snap.2359-T1
Valid prediction for GlimmerHMM_glimmerT_27837-T1
Valid prediction for snap_scaffold_11-snap.2335-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_11-snap.2330-T1
Valid prediction for GlimmerHMM_glimmerT_27834-T1
Valid prediction for snap_scaffold_11-snap.2329-T1
Valid prediction for GlimmerHMM_glimmerT_27832-T1
Valid prediction for snap_scaffold_11-snap.2348-T1
Valid prediction for GlimmerHMM_glimmerT_27827-T1
Valid prediction for snap_scaffold_11-snap.2360-T1
Valid prediction for snap_scaffold_11-snap.2332-T1
Valid prediction for Augustus_model.g18435.t1
Valid prediction for GlimmerHMM_glimmerT_27821-T1
Valid prediction for snap_scaffold_11-snap.2336-T1
Valid prediction for snap_scaffold_11-snap.2354-T1
Valid prediction for snap_scaffold_11-snap.2351-T1
Valid prediction for Augustus_model.g18433.t1
Valid prediction for snap_scaffold_11-snap.2349-T1
Valid prediction for snap_scaffold_11-snap.2334-T1
Valid prediction for snap_scaffold_11-snap.2347-T1
Valid prediction for snap_scaffold_11-snap.2337-T1
Valid prediction for Augustus_model.g18432.t1
Valid prediction for snap_scaffold_11-snap.2342-T1
Valid prediction for snap_scaffold_11-snap.2358-T1
Valid prediction for GlimmerHMM_glimmerT_27828-T1
Valid prediction for snap_scaffold_11-snap.2340-T1
Valid prediction for GlimmerHMM_glimmerT_27826-T1
Valid prediction for snap_scaffold_11-snap.2339-T1
Valid prediction for GlimmerHMM_glimmerT_27836-T1
Valid prediction for GlimmerHMM_glimmerT_27829-T1
Valid prediction for snap_scaffold_11-snap.2341-T1
Valid prediction for GlimmerHMM_glimmerT_27824-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7914, rend_intergenic: 6976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12054, rend_intergenic: 9528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26302, rend_intergenic: 25959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33185, rend_intergenic: 26460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53956, rend_intergenic: 36275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62293, rend_intergenic: 58348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91775, rend_intergenic: 87115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94825, rend_intergenic: 91970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100493, rend_intergenic: 95877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105046, rend_intergenic: 104777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111508, rend_intergenic: 110666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136324, rend_intergenic: 133965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142994, rend_intergenic: 139385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 170721
-exon list size: 232


building trellis

0.4    
0.9    
1.3    
1.7    
2.1    
2.6    
3.0    
3.4    
3.8    
4.3    
4.7    
5.1    
5.6    
6.0    
6.4    
6.8    
7.3    
7.7    
8.1    
8.5    
9.0    
9.4    
9.8    
10.3    
10.7    
11.1    
11.5    
12.0    
12.4    
12.8    
13.2    
13.7    
14.1    
14.5    
15.0    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
17.9    
18.4    
18.8    
19.2    
19.7    
20.1    
20.5    
20.9    
21.4    
21.8    
22.2    
22.6    
23.1    
23.5    
23.9    
24.4    
24.8    
25.2    
25.6    
26.1    
26.5    
26.9    
27.4    
27.8    
28.2    
28.6    
29.1    
29.5    
29.9    
30.3    
30.8    
31.2    
31.6    
32.1    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.0    
35.5    
35.9    
36.3    
36.8    
37.2    
37.6    
38.0    
38.5    
38.9    
39.3    
39.7    
40.2    
40.6    
41.0    
41.5    
41.9    
42.3    
42.7    
43.2    
43.6    
44.0    
44.4    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.9    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.1    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.6    
56.0    
56.4    
56.8    
57.3    
57.7    
58.1    
58.5    
59.0    
59.4    
59.8    
60.3    
60.7    
61.1    
61.5    
62.0    
62.4    
62.8    
63.2    
63.7    
64.1    
64.5    
65.0    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
67.9    
68.4    
68.8    
69.2    
69.7    
70.1    
70.5    
70.9    
71.4    
71.8    
72.2    
72.6    
73.1    
73.5    
73.9    
74.4    
74.8    
75.2    
75.6    
76.1    
76.5    
76.9    
77.4    
77.8    
78.2    
78.6    
79.1    
79.5    
79.9    
80.3    
80.8    
81.2    
81.6    
82.1    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.0    
85.5    
85.9    
86.3    
86.8    
87.2    
87.6    
88.0    
88.5    
88.9    
89.3    
89.7    
90.2    
90.6    
91.0    
91.5    
91.9    
92.3    
92.7    
93.2    
93.6    
94.0    
94.4    
94.9    
95.3    
95.7    
96.2    
96.6    
97.0    
97.4    
97.9    
98.3    
98.7    
99.1    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 7914, rend_intergenic: 6976  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12054, rend_intergenic: 9528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26302, rend_intergenic: 25959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33185, rend_intergenic: 26460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53956, rend_intergenic: 36275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62293, rend_intergenic: 58348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91775, rend_intergenic: 87115  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94825, rend_intergenic: 91970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100493, rend_intergenic: 95877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105046, rend_intergenic: 104777  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111508, rend_intergenic: 110666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136324, rend_intergenic: 133965  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142994, rend_intergenic: 139385  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support