-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1097

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 909, 968
Couldn't classify 2914, 3155
Sorry, prediction pasa_asmbl_5247.p1 fails validation.
(AGA)	 AG	909-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(AAC)	 AG	2235-2394	GT	AGG
(TCT)	 AG	2713-2772	GT	CTG
(ATT)	 AG	2914-3155	AG	ACA
-recovered pasa_asmbl_5247.p1, internal, 909, 968
-recovered pasa_asmbl_5247.p1, internal, 1246, 1479
-recovered pasa_asmbl_5247.p1, internal, 2235, 2394
-recovered pasa_asmbl_5247.p1, internal, 2713, 2772
Couldn't classify 2914, 3105
Sorry, prediction snap_scaffold_1097-snap.1-T1 fails validation.
(ATG)	 GC	21-254	GT	AGG
(AAG)	 AG	808-857	GT	ATG
(GAC)	 AG	872-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(TAC)	 AG	2304-2394	GT	AGG
(TCT)	 AG	2713-2793	GT	AGG
(ATT)	 AG	2914-3105	GT	CGG
-recovered snap_scaffold_1097-snap.1-T1, initial, 21, 254
-recovered snap_scaffold_1097-snap.1-T1, internal, 808, 857
-recovered snap_scaffold_1097-snap.1-T1, internal, 872, 968
-recovered snap_scaffold_1097-snap.1-T1, internal, 1246, 1479
-recovered snap_scaffold_1097-snap.1-T1, internal, 2304, 2394
-recovered snap_scaffold_1097-snap.1-T1, internal, 2713, 2793
-recovered snap_scaffold_1097-snap.1-T1, internal, 2914, 3105
Couldn't classify 2914, 3156
Sorry, prediction GlimmerHMM_glimmerT_60962-T1 fails validation.
(ATG)	 GC	21-254	GT	AGG
(TGC)	 AG	867-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(AAC)	 AG	2235-2394	GT	AGG
(TCT)	 AG	2713-2793	GT	AGG
(ATT)	 AG	2914-3156	GT	CAG
-recovered GlimmerHMM_glimmerT_60962-T1, initial, 21, 254
-recovered GlimmerHMM_glimmerT_60962-T1, internal, 867, 968
-recovered GlimmerHMM_glimmerT_60962-T1, internal, 1246, 1479
-recovered GlimmerHMM_glimmerT_60962-T1, internal, 2235, 2394
-recovered GlimmerHMM_glimmerT_60962-T1, internal, 2713, 2793
-recovered GlimmerHMM_glimmerT_60962-T1, internal, 2914, 3156
Couldn't classify 1, 254
Couldn't classify 2914, 3050
Sorry, prediction Augustus_model.g40350.t1 fails validation.
(TCA)	 GG	1-254	GT	AGG
(TGC)	 AG	867-968	GT	AGG
(CGC)	 AG	1246-1479	GT	AGG
(AAC)	 AG	2235-2394	GT	AGG
(TCT)	 AG	2713-2772	GT	CTG
(ATT)	 AG	2914-3050	GT	AGG
-recovered Augustus_model.g40350.t1, internal, 867, 968
-recovered Augustus_model.g40350.t1, internal, 1246, 1479
-recovered Augustus_model.g40350.t1, internal, 2235, 2394
-recovered Augustus_model.g40350.t1, internal, 2713, 2772
-recovered Augustus_model.g40350.t1, internal, 2914, 3050

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3301
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support