-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1096

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 486, 566
Couldn't classify 1742, 1970
Sorry, prediction snap_scaffold_1096-snap.2-T1 fails validation.
(CAG)	 AG	486-566	GT	GAG
(GCG)	 AG	1003-1133	GT	GTG
(GAA)	 AG	1742-1970	GT	CGG
-recovered snap_scaffold_1096-snap.2-T1, internal, 486, 566
-recovered snap_scaffold_1096-snap.2-T1, internal, 1003, 1133
-recovered snap_scaffold_1096-snap.2-T1, internal, 1742, 1970

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1281, 1367
Couldn't classify 2790, 2890
Sorry, prediction snap_scaffold_1096-snap.1-T1 fails validation.
(ATC)	 AG	1281-1367	GT	ATG
(GGT)	 AG	2234-2239	GT	GGG
(TCT)	 AG	2790-2890	GT	TTG
-recovered snap_scaffold_1096-snap.1-T1, internal, 1281, 1367
-recovered snap_scaffold_1096-snap.1-T1, internal, 2234, 2239
-recovered snap_scaffold_1096-snap.1-T1, internal, 2790, 2890

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2021, rend_intergenic: 486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3301
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2021, rend_intergenic: 486  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support