-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1094

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1531, 1754
Sorry, prediction snap_scaffold_1094-snap.2-T1 fails validation.
(ATG)	 GG	977-1076	GT	GGG
(GTT)	 AG	1531-1754	GT	CGG
-recovered snap_scaffold_1094-snap.2-T1, initial, 977, 1076
-recovered snap_scaffold_1094-snap.2-T1, internal, 1531, 1754

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60960-T1
Valid prediction for Augustus_model.g40349.t1
Couldn't classify 48, 132
Sorry, prediction snap_scaffold_1094-snap.1-T1 fails validation.
(TAT)	 AG	48-132	GT	AGG
(GAT)	 AG	554-712	GT	AGG
(GAC)	 AG	1470-1673	GT	CGG
(CTC)	 AG	2248-2355	GT	AGG
(GAA)	 AG	2580-2694	GT	AGG
(GGA)	 AG	2929-3059	GA	GAG
add_exon() Sorry, snap_scaffold_1094-snap.1-T1 2580-2694-terminal-3 is invalid.
-recovered snap_scaffold_1094-snap.1-T1, terminal, 2580, 2694
-recovered snap_scaffold_1094-snap.1-T1, terminal, 2929, 3059
-recovered snap_scaffold_1094-snap.1-T1, internal, 48, 132
-recovered snap_scaffold_1094-snap.1-T1, internal, 554, 712
-recovered snap_scaffold_1094-snap.1-T1, internal, 1470, 1673
-recovered snap_scaffold_1094-snap.1-T1, internal, 2248, 2355
-recovered snap_scaffold_1094-snap.1-T1, internal, 2580, 2694

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3259, rend_intergenic: 977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3306
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3259, rend_intergenic: 977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support