-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1088

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60954-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60954-T1 117-282-terminal-1 is invalid.
Couldn't classify 117, 245
Sorry, prediction snap_scaffold_1088-snap.1-T1 fails validation.
(AGA)	 AG	117-245	GT	AGG
(ATT)	 AG	480-538	GT	AGG
(TCC)	 AG	662-738	CT	AAC
-recovered snap_scaffold_1088-snap.1-T1, terminal, 662, 738
-recovered snap_scaffold_1088-snap.1-T1, internal, 117, 245
-recovered snap_scaffold_1088-snap.1-T1, internal, 480, 538
Couldn't classify 1, 245
Sorry, prediction Augustus_model.g40344.t1 fails validation.
(GAG)	 CC	1-245	GT	AGG
(ATT)	 AG	480-538	GT	AGG
(TCC)	 AG	662-738	CT	AAC
-recovered Augustus_model.g40344.t1, terminal, 662, 738
-recovered Augustus_model.g40344.t1, internal, 480, 538

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3326
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support