-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1086

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 713, 869
Sorry, prediction snap_scaffold_1086-snap.2-T1 fails validation.
(GGG)	 AG	713-869	GT	TGG
(TGT)	 AG	2151-2539	GT	CGG
(GTA)	 AG	3010-3069	CC	AGC
-recovered snap_scaffold_1086-snap.2-T1, terminal, 3010, 3069
-recovered snap_scaffold_1086-snap.2-T1, internal, 713, 869
-recovered snap_scaffold_1086-snap.2-T1, internal, 2151, 2539
Valid prediction for GlimmerHMM_glimmerT_60950-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 222, 335
Sorry, prediction GlimmerHMM_glimmerT_60951-T1 fails validation.
(CGG)	 AG	222-335	GT	AGG
(GGA)	 AG	635-766	GT	AGG
(CCC)	 AG	1266-1451	GT	AGG
(CGG)	 AG	1723-1793	CA	AAC
-recovered GlimmerHMM_glimmerT_60951-T1, terminal, 1723, 1793
-recovered GlimmerHMM_glimmerT_60951-T1, internal, 222, 335
-recovered GlimmerHMM_glimmerT_60951-T1, internal, 635, 766
-recovered GlimmerHMM_glimmerT_60951-T1, internal, 1266, 1451
Couldn't classify 222, 335
Couldn't classify 3198, 3286
Sorry, prediction Augustus_model.g40342.t1 fails validation.
(CGG)	 AG	222-335	GT	AGG
(GGA)	 AG	635-766	GT	AGG
(GTA)	 AG	1105-1170	GT	TGG
(CCC)	 AG	1266-1451	GT	AGG
(GCG)	 AG	1831-1991	GT	AAG
(TCT)	 AG	2500-2598	GT	CTG
(GGG)	 AG	3198-3286	GT	AAG
-recovered Augustus_model.g40342.t1, internal, 222, 335
-recovered Augustus_model.g40342.t1, internal, 635, 766
-recovered Augustus_model.g40342.t1, internal, 1105, 1170
-recovered Augustus_model.g40342.t1, internal, 1266, 1451
-recovered Augustus_model.g40342.t1, internal, 1831, 1991
-recovered Augustus_model.g40342.t1, internal, 2500, 2598
-recovered Augustus_model.g40342.t1, internal, 3198, 3286
Couldn't classify 3198, 3286
Sorry, prediction snap_scaffold_1086-snap.1-T1 fails validation.
(ATG)	 AG	236-335	GT	AGG
(GGA)	 AG	635-766	GT	AGG
(GTA)	 AG	1105-1170	GT	TGG
(CCC)	 AG	1266-1451	GT	AGG
(GCG)	 AG	1831-1991	GT	AAG
(TCT)	 AG	2500-2598	GT	CTG
(GGG)	 AG	3198-3286	GT	AAG
-recovered snap_scaffold_1086-snap.1-T1, initial, 236, 335
-recovered snap_scaffold_1086-snap.1-T1, internal, 236, 335
-recovered snap_scaffold_1086-snap.1-T1, internal, 635, 766
-recovered snap_scaffold_1086-snap.1-T1, internal, 1105, 1170
-recovered snap_scaffold_1086-snap.1-T1, internal, 1266, 1451
-recovered snap_scaffold_1086-snap.1-T1, internal, 1831, 1991
-recovered snap_scaffold_1086-snap.1-T1, internal, 2500, 2598
-recovered snap_scaffold_1086-snap.1-T1, internal, 3198, 3286

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3093, rend_intergenic: 713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3328
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3093, rend_intergenic: 713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support