-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1084

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 715, 835
Couldn't classify 2890, 3029
Sorry, prediction Augustus_model.g40340.t1 fails validation.
(TAT)	 AG	715-835	GT	TGG
(CCA)	 AG	1379-1532	GT	GAG
(GGT)	 AG	1764-1998	GT	GGG
(GGA)	 AG	2890-3029	GT	AGG
-recovered Augustus_model.g40340.t1, internal, 715, 835
-recovered Augustus_model.g40340.t1, internal, 1379, 1532
-recovered Augustus_model.g40340.t1, internal, 1764, 1998
-recovered Augustus_model.g40340.t1, internal, 2890, 3029
Couldn't classify 257, 422
Couldn't classify 2890, 3029
Sorry, prediction snap_scaffold_1084-snap.2-T1 fails validation.
(AGC)	 AG	257-422	GT	ATG
(TTC)	 AG	728-839	GT	ACG
(TCG)	 AG	1386-1649	GT	CCG
(GGT)	 AG	1764-1998	GT	GGG
(GGA)	 AG	2890-3029	GT	AGG
-recovered snap_scaffold_1084-snap.2-T1, internal, 257, 422
-recovered snap_scaffold_1084-snap.2-T1, internal, 728, 839
-recovered snap_scaffold_1084-snap.2-T1, internal, 1386, 1649
-recovered snap_scaffold_1084-snap.2-T1, internal, 1764, 1998
-recovered snap_scaffold_1084-snap.2-T1, internal, 2890, 3029
Valid prediction for GlimmerHMM_glimmerT_60948-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60948-T1 257-426-terminal-1 is invalid.
Couldn't classify 2890, 3029
Sorry, prediction GlimmerHMM_glimmerT_60949-T1 fails validation.
(ATG)	 CT	1401-1649	GT	CCG
(GGT)	 AG	1764-1998	GT	GGG
(GGA)	 AG	2890-3029	GT	AGG
-recovered GlimmerHMM_glimmerT_60949-T1, initial, 1401, 1649
-recovered GlimmerHMM_glimmerT_60949-T1, internal, 1764, 1998
-recovered GlimmerHMM_glimmerT_60949-T1, internal, 2890, 3029

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 313, 630
Couldn't classify 2943, 3087
Sorry, prediction snap_scaffold_1084-snap.1-T1 fails validation.
(AGC)	 AG	313-630	GT	AAG
(TTC)	 AG	807-873	GT	AAG
(GCG)	 AG	1343-1512	GT	AGG
(GGC)	 AG	2943-3087	GT	ATG
-recovered snap_scaffold_1084-snap.1-T1, internal, 313, 630
-recovered snap_scaffold_1084-snap.1-T1, internal, 807, 873
-recovered snap_scaffold_1084-snap.1-T1, internal, 1343, 1512
-recovered snap_scaffold_1084-snap.1-T1, internal, 2943, 3087

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3022, rend_intergenic: 257  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3334
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3022, rend_intergenic: 257  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support