-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1083

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1664, 1799
Sorry, prediction Augustus_model.g40339.t1 fails validation.
(TCG)	 AG	1664-1799	GT	ATG
(GTG)	 AG	1883-2243	GG	AGG
-recovered Augustus_model.g40339.t1, terminal, 1883, 2243
-recovered Augustus_model.g40339.t1, internal, 1664, 1799
Couldn't classify 1875, 2243
Sorry, prediction pasa_asmbl_5242.p2 fails validation.
(GCT)	 CT	1875-2243	GG	AGG
Couldn't classify 1664, 1799
Sorry, prediction GlimmerHMM_glimmerT_60947-T1 fails validation.
(TCG)	 AG	1664-1799	GT	ATG
(GTG)	 AG	1883-2243	GG	AGG
-recovered GlimmerHMM_glimmerT_60947-T1, terminal, 1883, 2243
-recovered GlimmerHMM_glimmerT_60947-T1, internal, 1664, 1799
Couldn't classify 36, 377
Sorry, prediction snap_scaffold_1083-snap.1-T1 fails validation.
(GAA)	 AG	36-377	GT	TGG
(TCG)	 AG	1664-1799	GT	ATG
(GTG)	 AG	1883-2243	GG	AGG
-recovered snap_scaffold_1083-snap.1-T1, terminal, 1883, 2243
-recovered snap_scaffold_1083-snap.1-T1, internal, 36, 377
-recovered snap_scaffold_1083-snap.1-T1, internal, 1664, 1799

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3338
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support