-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_108

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59799-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59799-T1 930-1096-terminal-1 is invalid.
Valid prediction for snap_scaffold_108-snap.4-T1
Valid prediction for snap_scaffold_108-snap.1-T1
Couldn't classify 13443, 13680
Sorry, prediction snap_scaffold_108-snap.5-T1 fails validation.
(ATG)	 AG	9203-9217	GT	GAG
(CTC)	 AG	13345-13424	GT	GTG
(ACA)	 AG	13443-13680	GT	CAG
-recovered snap_scaffold_108-snap.5-T1, initial, 9203, 9217
-recovered snap_scaffold_108-snap.5-T1, internal, 9203, 9217
-recovered snap_scaffold_108-snap.5-T1, internal, 13345, 13424
-recovered snap_scaffold_108-snap.5-T1, internal, 13443, 13680

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2145, 2209
Sorry, prediction snap_scaffold_108-snap.3-T1 fails validation.
(TGG)	 AG	2145-2209	GT	ATG
(GGG)	 AG	6539-6640	GT	GGG
(GAG)	 AG	6808-7213	GT	AGG
(CGT)	 AG	11349-11532	GT	ATG
(CGC)	 AG	12001-12321	AC	AGA
-recovered snap_scaffold_108-snap.3-T1, terminal, 12001, 12321
-recovered snap_scaffold_108-snap.3-T1, internal, 2145, 2209
-recovered snap_scaffold_108-snap.3-T1, internal, 6539, 6640
-recovered snap_scaffold_108-snap.3-T1, internal, 6808, 7213
-recovered snap_scaffold_108-snap.3-T1, internal, 11349, 11532
Couldn't classify 126, 180
Sorry, prediction GlimmerHMM_glimmerT_59801-T1 fails validation.
(GGA)	 AG	126-180	GT	GAG
(TGA)	 AG	6535-6692	CC	GAC
-recovered GlimmerHMM_glimmerT_59801-T1, terminal, 6535, 6692
-recovered GlimmerHMM_glimmerT_59801-T1, internal, 126, 180
Valid prediction for snap_scaffold_108-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59800-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3084, rend_intergenic: 2033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12974, rend_intergenic: 3245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15118
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3084, rend_intergenic: 2033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12974, rend_intergenic: 3245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support