-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1078

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2677, 2796
Sorry, prediction GlimmerHMM_glimmerT_60943-T1 fails validation.
(ATG)	 AC	1003-1050	GT	AGG
(AGG)	 AG	1324-1425	GT	GAG
(AGG)	 AG	2677-2796	GT	AGG
-recovered GlimmerHMM_glimmerT_60943-T1, initial, 1003, 1050
-recovered GlimmerHMM_glimmerT_60943-T1, internal, 1324, 1425
-recovered GlimmerHMM_glimmerT_60943-T1, internal, 2677, 2796
Couldn't classify 1, 64
Sorry, prediction Augustus_model.g40336.t1 fails validation.
(TGT)	 TC	1-64	GT	AGG
(GGA)	 AG	814-1050	GT	AGG
(ATC)	 AG	1278-1410	GT	ACG
(AGG)	 AG	2677-2817	CC	AGC
-recovered Augustus_model.g40336.t1, terminal, 2677, 2817
-recovered Augustus_model.g40336.t1, internal, 814, 1050
-recovered Augustus_model.g40336.t1, internal, 1278, 1410

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2280, 2435
Sorry, prediction snap_scaffold_1078-snap.1-T1 fails validation.
(ATG)	 GA	405-468	GT	AAG
(GAA)	 AG	497-566	GT	ACG
(GTC)	 AG	618-801	GT	CTG
(ACT)	 AG	1130-1678	GT	AGG
(GTC)	 AG	1966-2154	GT	CTG
(CGG)	 AG	2280-2435	GT	CTG
-recovered snap_scaffold_1078-snap.1-T1, initial, 405, 468
-recovered snap_scaffold_1078-snap.1-T1, internal, 497, 566
-recovered snap_scaffold_1078-snap.1-T1, internal, 618, 801
-recovered snap_scaffold_1078-snap.1-T1, internal, 1130, 1678
-recovered snap_scaffold_1078-snap.1-T1, internal, 1966, 2154
-recovered snap_scaffold_1078-snap.1-T1, internal, 2280, 2435

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3348
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support