-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1075

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 99, 264
Couldn't classify 3214, 3315
Sorry, prediction snap_scaffold_1075-snap.2-T1 fails validation.
(GGA)	 AG	99-264	GT	ACG
(TTT)	 AG	1575-1669	GT	AGG
(GAG)	 AG	2134-2344	GT	AGG
(TCC)	 AG	3214-3315	GT	GAG
-recovered snap_scaffold_1075-snap.2-T1, internal, 99, 264
-recovered snap_scaffold_1075-snap.2-T1, internal, 1575, 1669
-recovered snap_scaffold_1075-snap.2-T1, internal, 2134, 2344
-recovered snap_scaffold_1075-snap.2-T1, internal, 3214, 3315

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 87, 189
Couldn't classify 3096, 3310
Sorry, prediction snap_scaffold_1075-snap.1-T1 fails validation.
(CTG)	 AG	87-189	GT	AGG
(CCT)	 AG	1126-1303	GT	CAG
(GGA)	 AG	3096-3310	GT	AGG
-recovered snap_scaffold_1075-snap.1-T1, internal, 87, 189
-recovered snap_scaffold_1075-snap.1-T1, internal, 1126, 1303
-recovered snap_scaffold_1075-snap.1-T1, internal, 3096, 3310
Couldn't classify 87, 189
Sorry, prediction GlimmerHMM_glimmerT_60939-T1 fails validation.
(CTG)	 AG	87-189	GT	AGG
(CCT)	 AG	1126-1295	GT	GAG
(GGA)	 AG	3096-3182	AG	GAA
-recovered GlimmerHMM_glimmerT_60939-T1, terminal, 3096, 3182
-recovered GlimmerHMM_glimmerT_60939-T1, internal, 87, 189
-recovered GlimmerHMM_glimmerT_60939-T1, internal, 1126, 1295
Couldn't classify 3096, 3310
Sorry, prediction Augustus_model.g40334.t1 fails validation.
(ATG)	 CA	165-189	GT	AGG
(CCT)	 AG	1126-1303	GT	CAG
(GGA)	 AG	3096-3310	GT	AGG
-recovered Augustus_model.g40334.t1, initial, 165, 189
-recovered Augustus_model.g40334.t1, internal, 1126, 1303
-recovered Augustus_model.g40334.t1, internal, 3096, 3310

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3278, rend_intergenic: 99  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3364
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3278, rend_intergenic: 99  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support