-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1072

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 281, 472
Sorry, prediction Augustus_model.g40331.t1 fails validation.
(GTA)	 AG	281-472	GT	TTG
(GTG)	 AG	725-837	GG	GAG
-recovered Augustus_model.g40331.t1, terminal, 725, 837
-recovered Augustus_model.g40331.t1, internal, 281, 472

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 352, 450
Couldn't classify 2913, 3018
Sorry, prediction snap_scaffold_1072-snap.1-T1 fails validation.
(CTG)	 AG	352-450	GT	AGG
(GGA)	 AG	2913-3018	GT	TCG
-recovered snap_scaffold_1072-snap.1-T1, internal, 352, 450
-recovered snap_scaffold_1072-snap.1-T1, internal, 2913, 3018
Valid prediction for Augustus_model.g40332.t1
add_exon() Sorry, Augustus_model.g40332.t1 352-454-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3369
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support