-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1071

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1071-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60938-T1
Couldn't classify 3000, 3197
Sorry, prediction Augustus_model.g40330.t1 fails validation.
(ATG)	 AG	1386-1583	GT	GGG
(ACT)	 AG	2178-2231	GT	CGG
(GTC)	 AG	3000-3197	GT	AGG
-recovered Augustus_model.g40330.t1, initial, 1386, 1583
-recovered Augustus_model.g40330.t1, internal, 1386, 1583
-recovered Augustus_model.g40330.t1, internal, 2178, 2231
-recovered Augustus_model.g40330.t1, internal, 3000, 3197
Couldn't classify 3000, 3197
Sorry, prediction snap_scaffold_1071-snap.2-T1 fails validation.
(ATG)	 AG	1386-1583	GT	GGG
(ACT)	 AG	2178-2231	GT	CGG
(GTC)	 AG	3000-3197	GT	AGG
-recovered snap_scaffold_1071-snap.2-T1, initial, 1386, 1583
-recovered snap_scaffold_1071-snap.2-T1, internal, 1386, 1583
-recovered snap_scaffold_1071-snap.2-T1, internal, 2178, 2231
-recovered snap_scaffold_1071-snap.2-T1, internal, 3000, 3197

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1915, rend_intergenic: 187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3383
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1915, rend_intergenic: 187  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support