-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_107

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 14023, 14106
Sorry, prediction snap_scaffold_107-snap.3-T1 fails validation.
(ATG)	 AA	6906-7151	GT	TGG
(AGC)	 AG	7340-7480	GT	CGG
(CTC)	 AG	8988-9057	GT	AGG
(TGG)	 AG	9107-9251	GT	AGG
(GAC)	 AG	14023-14106	GT	GTG
-recovered snap_scaffold_107-snap.3-T1, initial, 6906, 7151
-recovered snap_scaffold_107-snap.3-T1, internal, 7340, 7480
-recovered snap_scaffold_107-snap.3-T1, internal, 8988, 9057
-recovered snap_scaffold_107-snap.3-T1, internal, 9107, 9251
-recovered snap_scaffold_107-snap.3-T1, internal, 14023, 14106
Valid prediction for GlimmerHMM_glimmerT_59797-T1
Valid prediction for Augustus_model.g39622.t1
Valid prediction for snap_scaffold_107-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 15086, 15184
Sorry, prediction Augustus_model.g39621.t1 fails validation.
(ATG)	 CG	12022-12093	GT	AGG
(CGT)	 AG	13696-13806	GT	AGG
(GCG)	 AG	14563-14712	GT	TGG
(CTG)	 AG	14813-14920	GT	AGG
(CTG)	 AG	15086-15184	GT	GGG
-recovered Augustus_model.g39621.t1, initial, 12022, 12093
-recovered Augustus_model.g39621.t1, internal, 13696, 13806
-recovered Augustus_model.g39621.t1, internal, 14563, 14712
-recovered Augustus_model.g39621.t1, internal, 14813, 14920
-recovered Augustus_model.g39621.t1, internal, 15086, 15184
Valid prediction for GlimmerHMM_glimmerT_59798-T1
Valid prediction for GlimmerHMM_glimmerT_59795-T1
Valid prediction for snap_scaffold_107-snap.4-T1
Couldn't classify 15086, 15184
Sorry, prediction snap_scaffold_107-snap.1-T1 fails validation.
(ATG)	 CG	10120-10228	GT	GCG
(CCG)	 AG	11996-12093	GT	AGG
(CGT)	 AG	13696-13806	GT	AGG
(GCG)	 AG	14563-14712	GT	TGG
(CTG)	 AG	14813-14920	GT	AGG
(CTG)	 AG	15086-15184	GT	GGG
-recovered snap_scaffold_107-snap.1-T1, initial, 10120, 10228
-recovered snap_scaffold_107-snap.1-T1, internal, 11996, 12093
-recovered snap_scaffold_107-snap.1-T1, internal, 13696, 13806
-recovered snap_scaffold_107-snap.1-T1, internal, 14563, 14712
-recovered snap_scaffold_107-snap.1-T1, internal, 14813, 14920
-recovered snap_scaffold_107-snap.1-T1, internal, 15086, 15184
Valid prediction for GlimmerHMM_glimmerT_59796-T1
Valid prediction for Augustus_model.g39623.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14106, rend_intergenic: 7415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15282
-exon list size: 38


building trellis

2.5    
5.0    
7.5    
10.0    
12.5    
15.0    
17.5    
20.0    
22.5    
25.0    
27.5    
30.0    
32.5    
35.0    
37.5    
40.0    
42.5    
45.0    
47.5    
50.0    
52.5    
55.0    
57.5    
60.0    
62.5    
65.0    
67.5    
70.0    
72.5    
75.0    
77.5    
80.0    
82.5    
85.0    
87.5    
90.0    
92.5    
95.0    
97.5    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 14106, rend_intergenic: 7415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support