-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1068

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60937-T1
add_exon() Sorry, GlimmerHMM_glimmerT_60937-T1 2353-2677-terminal-1 is invalid.
Valid prediction for Augustus_model.g40329.t1
Couldn't classify 871, 904
Couldn't classify 2681, 2819
Sorry, prediction snap_scaffold_1068-snap.2-T1 fails validation.
(AGA)	 AG	871-904	GT	AGG
(TTT)	 AG	2377-2524	GT	TGG
(ATG)	 AG	2681-2819	GT	GGG
-recovered snap_scaffold_1068-snap.2-T1, initial, 2681, 2819
-recovered snap_scaffold_1068-snap.2-T1, internal, 871, 904
-recovered snap_scaffold_1068-snap.2-T1, internal, 2377, 2524
-recovered snap_scaffold_1068-snap.2-T1, internal, 2681, 2819

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 842, 1115
Couldn't classify 2948, 3062
Sorry, prediction snap_scaffold_1068-snap.1-T1 fails validation.
(GGT)	 AG	842-1115	GT	TGG
(AAG)	 AG	2770-2850	GT	AGG
(GTG)	 AG	2948-3062	GT	TGG
-recovered snap_scaffold_1068-snap.1-T1, internal, 842, 1115
-recovered snap_scaffold_1068-snap.1-T1, internal, 2770, 2850
-recovered snap_scaffold_1068-snap.1-T1, internal, 2948, 3062

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2554, rend_intergenic: 871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3395
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2554, rend_intergenic: 871  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support