-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1066

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 67, 238
Couldn't classify 3230, 3337
Sorry, prediction snap_scaffold_1066-snap.1-T1 fails validation.
(GGA)	 AG	67-238	GT	GCG
(GAA)	 AG	521-673	GT	GGG
(GCT)	 AG	1081-1310	GT	GGG
(GAG)	 AG	1671-1823	GT	CGG
(TGT)	 AG	3230-3337	GT	TGG
-recovered snap_scaffold_1066-snap.1-T1, internal, 67, 238
-recovered snap_scaffold_1066-snap.1-T1, internal, 521, 673
-recovered snap_scaffold_1066-snap.1-T1, internal, 1081, 1310
-recovered snap_scaffold_1066-snap.1-T1, internal, 1671, 1823
-recovered snap_scaffold_1066-snap.1-T1, internal, 3230, 3337
Valid prediction for GlimmerHMM_glimmerT_60935-T1
Couldn't classify 67, 238
Couldn't classify 3230, 3337
Sorry, prediction Augustus_model.g40328.t1 fails validation.
(GGA)	 AG	67-238	GT	GCG
(GAA)	 AG	521-673	GT	GGG
(GCT)	 AG	1081-1306	GT	AGG
(CTT)	 AG	1706-1823	GT	CGG
(TGT)	 AG	3230-3337	GT	TGG
-recovered Augustus_model.g40328.t1, internal, 67, 238
-recovered Augustus_model.g40328.t1, internal, 521, 673
-recovered Augustus_model.g40328.t1, internal, 1081, 1306
-recovered Augustus_model.g40328.t1, internal, 1706, 1823
-recovered Augustus_model.g40328.t1, internal, 3230, 3337
Couldn't classify 1651, 1768
Sorry, prediction GlimmerHMM_glimmerT_60936-T1 fails validation.
(ATG)	 TG	246-293	GT	CTG
(TGT)	 AG	526-673	GT	GGG
(GCT)	 AG	1081-1306	GT	AGG
(GGC)	 AG	1651-1768	GT	CTG
-recovered GlimmerHMM_glimmerT_60936-T1, initial, 246, 293
-recovered GlimmerHMM_glimmerT_60936-T1, internal, 526, 673
-recovered GlimmerHMM_glimmerT_60936-T1, internal, 1081, 1306
-recovered GlimmerHMM_glimmerT_60936-T1, internal, 1651, 1768

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3401
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support