-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1060

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3366, 3412
Sorry, prediction snap_scaffold_1060-snap.1-T1 fails validation.
(ATG)	 CT	252-306	GT	AGG
(ACA)	 AG	1205-1589	GT	CAG
(CGA)	 AG	2832-2884	GT	TGG
(TCA)	 AG	3366-3412	GT	TGG
-recovered snap_scaffold_1060-snap.1-T1, initial, 252, 306
-recovered snap_scaffold_1060-snap.1-T1, internal, 1205, 1589
-recovered snap_scaffold_1060-snap.1-T1, internal, 2832, 2884
-recovered snap_scaffold_1060-snap.1-T1, internal, 3366, 3412
Valid prediction for GlimmerHMM_glimmerT_60931-T1
Couldn't classify 233, 306
Sorry, prediction Augustus_model.g40326.t1 fails validation.
(ACA)	 AG	233-306	GT	AGG
(TGG)	 AG	780-1124	GT	AGG
(ACA)	 AG	1205-1453	GT	GTG
(CGA)	 AG	2832-2881	GT	CAG
(GGG)	 AG	3277-3381	CC	GAC
-recovered Augustus_model.g40326.t1, terminal, 3277, 3381
-recovered Augustus_model.g40326.t1, internal, 233, 306
-recovered Augustus_model.g40326.t1, internal, 780, 1124
-recovered Augustus_model.g40326.t1, internal, 1205, 1453
-recovered Augustus_model.g40326.t1, internal, 2832, 2881

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 47, 153
Couldn't classify 1273, 1458
Sorry, prediction snap_scaffold_1060-snap.2-T1 fails validation.
(TCT)	 AG	47-153	GT	GGG
(GAG)	 AG	1273-1458	GT	AGG
-recovered snap_scaffold_1060-snap.2-T1, internal, 47, 153
-recovered snap_scaffold_1060-snap.2-T1, internal, 1273, 1458

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3412, rend_intergenic: 1966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3423
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3412, rend_intergenic: 1966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support