-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_106

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_106-snap.5-T1
Valid prediction for snap_scaffold_106-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g39619.t1
Valid prediction for snap_scaffold_106-snap.2-T1
Couldn't classify 2999, 3211
Sorry, prediction snap_scaffold_106-snap.4-T1 fails validation.
(GTG)	 AG	2999-3211	GT	GGG
(GTG)	 AG	3839-4031	GT	AGG
(GCA)	 AG	4785-4937	GT	CGG
(GGC)	 AG	5301-5364	CT	AGC
-recovered snap_scaffold_106-snap.4-T1, terminal, 5301, 5364
-recovered snap_scaffold_106-snap.4-T1, internal, 2999, 3211
-recovered snap_scaffold_106-snap.4-T1, internal, 3839, 4031
-recovered snap_scaffold_106-snap.4-T1, internal, 4785, 4937
Valid prediction for snap_scaffold_106-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59793-T1
Couldn't classify 2999, 3133
Sorry, prediction GlimmerHMM_glimmerT_59794-T1 fails validation.
(GTG)	 AG	2999-3133	GT	CAG
(GTG)	 AG	3839-4031	GT	AGG
(GCA)	 AG	4785-4918	GT	CTG
(CTG)	 AG	5485-5543	CG	GAC
-recovered GlimmerHMM_glimmerT_59794-T1, terminal, 5485, 5543
-recovered GlimmerHMM_glimmerT_59794-T1, internal, 2999, 3133
-recovered GlimmerHMM_glimmerT_59794-T1, internal, 3839, 4031
-recovered GlimmerHMM_glimmerT_59794-T1, internal, 4785, 4918
Valid prediction for Augustus_model.g39620.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9141, rend_intergenic: 5586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10126, rend_intergenic: 9927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12292, rend_intergenic: 10452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15290
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 9141, rend_intergenic: 5586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10126, rend_intergenic: 9927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12292, rend_intergenic: 10452  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support