-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1048

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 77, 157
Sorry, prediction Augustus_model.g40323.t1 fails validation.
(AGG)	 AG	77-157	GT	TGG
(CTC)	 AG	328-480	GT	TGG
(CGT)	 AG	1065-1174	GT	CTG
(TTT)	 AG	2937-3179	CC	AGC
-recovered Augustus_model.g40323.t1, terminal, 2937, 3179
-recovered Augustus_model.g40323.t1, internal, 77, 157
-recovered Augustus_model.g40323.t1, internal, 328, 480
-recovered Augustus_model.g40323.t1, internal, 1065, 1174
Couldn't classify 34, 157
Couldn't classify 2937, 3147
Sorry, prediction snap_scaffold_1048-snap.1-T1 fails validation.
(GTG)	 AG	34-157	GT	TGG
(CTC)	 AG	328-480	GT	TGG
(CGT)	 AG	1065-1174	GT	CTG
(TTT)	 AG	2937-3147	GT	AGG
-recovered snap_scaffold_1048-snap.1-T1, internal, 34, 157
-recovered snap_scaffold_1048-snap.1-T1, internal, 328, 480
-recovered snap_scaffold_1048-snap.1-T1, internal, 1065, 1174
-recovered snap_scaffold_1048-snap.1-T1, internal, 2937, 3147

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 348, 463
Sorry, prediction snap_scaffold_1048-snap.2-T1 fails validation.
(GTC)	 AG	348-463	GT	AGG
(GTT)	 AG	2287-2387	GT	GGG
(CGG)	 AG	2408-2624	AG	GAA
-recovered snap_scaffold_1048-snap.2-T1, terminal, 2408, 2624
-recovered snap_scaffold_1048-snap.2-T1, internal, 348, 463
-recovered snap_scaffold_1048-snap.2-T1, internal, 2287, 2387

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3147, rend_intergenic: 842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3465
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3147, rend_intergenic: 842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support