-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1033

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3059, 3260
Sorry, prediction Augustus_model.g40317.t1 fails validation.
(ATG)	 GT	2168-2339	GT	CAG
(GTA)	 AG	2427-2527	GT	AGG
(GCC)	 AG	3059-3260	GT	AGG
-recovered Augustus_model.g40317.t1, initial, 2168, 2339
-recovered Augustus_model.g40317.t1, internal, 2427, 2527
-recovered Augustus_model.g40317.t1, internal, 3059, 3260
Couldn't classify 3059, 3260
Sorry, prediction snap_scaffold_1033-snap.1-T1 fails validation.
(ATG)	 GT	2168-2369	GT	TGG
(GTA)	 AG	2427-2527	GT	AGG
(GCC)	 AG	3059-3260	GT	AGG
-recovered snap_scaffold_1033-snap.1-T1, initial, 2168, 2369
-recovered snap_scaffold_1033-snap.1-T1, internal, 2427, 2527
-recovered snap_scaffold_1033-snap.1-T1, internal, 3059, 3260
Couldn't classify 2189, 2339
Couldn't classify 3059, 3265
Sorry, prediction pasa_asmbl_5237.p1 fails validation.
(GAT)	 CC	2189-2339	GT	CAG
(GTA)	 AG	2427-2527	GT	AGG
(GCC)	 AG	3059-3265	TC	TGT
-recovered pasa_asmbl_5237.p1, internal, 2427, 2527
Couldn't classify 2196, 2369
Sorry, prediction GlimmerHMM_glimmerT_60914-T1 fails validation.
(AGC)	 AG	2196-2369	GT	TGG
(GTA)	 AG	2427-2527	GT	AGG
(GCC)	 AG	3059-3340	TG	GAT
-recovered GlimmerHMM_glimmerT_60914-T1, terminal, 3059, 3340
-recovered GlimmerHMM_glimmerT_60914-T1, internal, 2196, 2369
-recovered GlimmerHMM_glimmerT_60914-T1, internal, 2427, 2527

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3510
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support