-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1031

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 287, 466
Couldn't classify 3140, 3193
Sorry, prediction snap_scaffold_1031-snap.1-T1 fails validation.
(ATC)	 AG	287-466	GT	GGG
(GGC)	 AG	1002-1085	GT	AGG
(ATA)	 AG	3140-3193	GT	AGG
-recovered snap_scaffold_1031-snap.1-T1, internal, 287, 466
-recovered snap_scaffold_1031-snap.1-T1, internal, 1002, 1085
-recovered snap_scaffold_1031-snap.1-T1, internal, 3140, 3193

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_60913-T1
Couldn't classify 3082, 3307
Sorry, prediction Augustus_model.g40316.t1 fails validation.
(ATG)	 CC	2616-2725	GT	AGG
(GGT)	 AG	3082-3307	GT	AGG
-recovered Augustus_model.g40316.t1, initial, 2616, 2725
-recovered Augustus_model.g40316.t1, internal, 3082, 3307

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3523
-exon list size: 8


building trellis

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-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support