-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1025

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 727, 907
Sorry, prediction snap_scaffold_1025-snap.1-T1 fails validation.
(GCA)	 AG	727-907	GT	ATG
(AGC)	 AG	2868-3005	TT	AGT
-recovered snap_scaffold_1025-snap.1-T1, terminal, 2868, 3005
-recovered snap_scaffold_1025-snap.1-T1, internal, 727, 907

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 102, 198
Sorry, prediction GlimmerHMM_glimmerT_60908-T1 fails validation.
(TAC)	 AG	102-198	GT	GGG
(GTG)	 AG	437-687	GT	TGG
(ATG)	 AG	2632-2832	TT	AGT
-recovered GlimmerHMM_glimmerT_60908-T1, terminal, 2632, 2832
-recovered GlimmerHMM_glimmerT_60908-T1, internal, 102, 198
-recovered GlimmerHMM_glimmerT_60908-T1, internal, 437, 687
Couldn't classify 66, 198
Couldn't classify 2632, 2808
Sorry, prediction snap_scaffold_1025-snap.2-T1 fails validation.
(ATA)	 AG	66-198	GT	GGG
(GTG)	 AG	437-687	GT	TGG
(ATG)	 AG	2632-2808	GT	TGG
-recovered snap_scaffold_1025-snap.2-T1, initial, 2632, 2808
-recovered snap_scaffold_1025-snap.2-T1, internal, 66, 198
-recovered snap_scaffold_1025-snap.2-T1, internal, 437, 687
-recovered snap_scaffold_1025-snap.2-T1, internal, 2632, 2808
Couldn't classify 102, 198
Sorry, prediction Augustus_model.g40313.t1 fails validation.
(TAC)	 AG	102-198	GT	GGG
(GTG)	 AG	437-687	GT	TGG
(ATG)	 AG	2632-2832	TT	AGT
-recovered Augustus_model.g40313.t1, terminal, 2632, 2832
-recovered Augustus_model.g40313.t1, internal, 102, 198
-recovered Augustus_model.g40313.t1, internal, 437, 687

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3005, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3544
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3005, rend_intergenic: 737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support