-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1022

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 160, 300
Couldn't classify 2952, 3085
Sorry, prediction snap_scaffold_1022-snap.2-T1 fails validation.
(TCT)	 AG	160-300	GT	AGG
(TCG)	 AG	2425-2479	GT	TGG
(CCA)	 AG	2952-3085	GT	GAG
-recovered snap_scaffold_1022-snap.2-T1, internal, 160, 300
-recovered snap_scaffold_1022-snap.2-T1, internal, 2425, 2479
-recovered snap_scaffold_1022-snap.2-T1, internal, 2952, 3085

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 105, 341
Sorry, prediction GlimmerHMM_glimmerT_60907-T1 fails validation.
(GCT)	 AG	105-341	GT	AGG
(GGG)	 AG	487-618	GT	AGG
(GCG)	 AG	1060-1176	GT	AGG
(TGT)	 AG	2782-2882	GT	GTG
(GCT)	 AG	3244-3252	GC	GAG
-recovered GlimmerHMM_glimmerT_60907-T1, terminal, 3244, 3252
-recovered GlimmerHMM_glimmerT_60907-T1, internal, 105, 341
-recovered GlimmerHMM_glimmerT_60907-T1, internal, 487, 618
-recovered GlimmerHMM_glimmerT_60907-T1, internal, 1060, 1176
-recovered GlimmerHMM_glimmerT_60907-T1, internal, 2782, 2882
-recovered GlimmerHMM_glimmerT_60907-T1, internal, 3244, 3252
Valid prediction for CodingQuarry_transcript_5703-T1
Couldn't classify 105, 341
Couldn't classify 3244, 3495
Sorry, prediction Augustus_model.g40312.t1 fails validation.
(GCT)	 AG	105-341	GT	AGG
(GGG)	 AG	487-618	GT	AGG
(GCG)	 AG	1060-1176	GT	AGG
(TGT)	 AG	2782-2901	GT	AGG
(GCT)	 AG	3244-3495	GT	TGG
-recovered Augustus_model.g40312.t1, internal, 105, 341
-recovered Augustus_model.g40312.t1, internal, 487, 618
-recovered Augustus_model.g40312.t1, internal, 1060, 1176
-recovered Augustus_model.g40312.t1, internal, 2782, 2901
-recovered Augustus_model.g40312.t1, internal, 3244, 3495
Couldn't classify 56, 341
Couldn't classify 1060, 1175
Sorry, prediction pasa_asmbl_5232.p1 fails validation.
(GAG)	 TG	56-341	GT	AGG
(GGG)	 AG	487-618	GT	AGG
(GCG)	 AG	1060-1175	GG	CAG
-recovered pasa_asmbl_5232.p1, internal, 487, 618
Couldn't classify 2787, 2901
Couldn't classify 3244, 3494
Sorry, prediction pasa_asmbl_5233.p1 fails validation.
(AGG)	 AC	2787-2901	GT	AGG
(GCT)	 AG	3244-3494	GG	ATG
Couldn't classify 105, 341
Couldn't classify 3244, 3495
Sorry, prediction snap_scaffold_1022-snap.1-T1 fails validation.
(GCT)	 AG	105-341	GT	AGG
(GGG)	 AG	487-618	GT	AGG
(GCG)	 AG	1060-1176	GT	AGG
(TGT)	 AG	2782-2901	GT	AGG
(GCT)	 AG	3244-3495	GT	TGG
-recovered snap_scaffold_1022-snap.1-T1, internal, 105, 341
-recovered snap_scaffold_1022-snap.1-T1, internal, 487, 618
-recovered snap_scaffold_1022-snap.1-T1, internal, 1060, 1176
-recovered snap_scaffold_1022-snap.1-T1, internal, 2782, 2901
-recovered snap_scaffold_1022-snap.1-T1, internal, 3244, 3495

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3444, rend_intergenic: 160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 3548
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3444, rend_intergenic: 160  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support