-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1016

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_60906-T1
Couldn't classify 596, 816
Couldn't classify 2178, 2344
Sorry, prediction snap_scaffold_1016-snap.1-T1 fails validation.
(GGT)	 AG	596-816	GT	AAG
(GAA)	 AG	2178-2344	GT	GGG
-recovered snap_scaffold_1016-snap.1-T1, internal, 596, 816
-recovered snap_scaffold_1016-snap.1-T1, internal, 2178, 2344
Couldn't classify 593, 816
Couldn't classify 2178, 2289
Sorry, prediction Augustus_model.g40311.t1 fails validation.
(CAG)	 AG	593-816	GT	AAG
(GAA)	 AG	2178-2289	GT	CAG
-recovered Augustus_model.g40311.t1, internal, 593, 816
-recovered Augustus_model.g40311.t1, internal, 2178, 2289

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3580
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support