-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_100

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 11277, 11406
Sorry, prediction snap_scaffold_100-snap.3-T1 fails validation.
(ATG)	 TG	9770-10131	GT	AGG
(TGA)	 AG	10829-10848	GT	GGG
(AAG)	 AG	11277-11406	GT	AGG
-recovered snap_scaffold_100-snap.3-T1, initial, 9770, 10131
-recovered snap_scaffold_100-snap.3-T1, internal, 10829, 10848
-recovered snap_scaffold_100-snap.3-T1, internal, 11277, 11406
Couldn't classify 1411, 1498
Sorry, prediction snap_scaffold_100-snap.1-T1 fails validation.
(ATC)	 AG	1411-1498	GT	GGG
(GGG)	 AG	9565-9724	GT	GAG
-recovered snap_scaffold_100-snap.1-T1, terminal, 9565, 9724
-recovered snap_scaffold_100-snap.1-T1, internal, 1411, 1498
-recovered snap_scaffold_100-snap.1-T1, internal, 9565, 9724

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_100-snap.4-T1
add_exon() Sorry, snap_scaffold_100-snap.4-T1 306-558-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_59781-T1
Valid prediction for snap_scaffold_100-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9724, rend_intergenic: 6033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14823, rend_intergenic: 9770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 15886
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9724, rend_intergenic: 6033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14823, rend_intergenic: 9770  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support