-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_9980501-10174981

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.1955-T1
Valid prediction for snap_scaffold_10-snap.1945-T1
Valid prediction for GlimmerHMM_glimmerT_25276-T1
Valid prediction for GlimmerHMM_glimmerT_25275-T1
Valid prediction for snap_scaffold_10-snap.1950-T1
Valid prediction for GlimmerHMM_glimmerT_25289-T1
Valid prediction for snap_scaffold_10-snap.1971-T1
Valid prediction for snap_scaffold_10-snap.1966-T1
Valid prediction for GlimmerHMM_glimmerT_25281-T1
Valid prediction for snap_scaffold_10-snap.1942-T1
Valid prediction for snap_scaffold_10-snap.1970-T1
Valid prediction for Augustus_model.g16822.t1
Valid prediction for GlimmerHMM_glimmerT_25296-T1
Valid prediction for snap_scaffold_10-snap.1953-T1
Valid prediction for GlimmerHMM_glimmerT_25294-T1
Valid prediction for GlimmerHMM_glimmerT_25295-T1
Valid prediction for GlimmerHMM_glimmerT_25283-T1
Valid prediction for GlimmerHMM_glimmerT_25297-T1
Valid prediction for GlimmerHMM_glimmerT_25279-T1
Valid prediction for Augustus_model.g16823.t1
Valid prediction for GlimmerHMM_glimmerT_25288-T1
Valid prediction for snap_scaffold_10-snap.1961-T1
Valid prediction for GlimmerHMM_glimmerT_25278-T1
Valid prediction for snap_scaffold_10-snap.1944-T1
Valid prediction for GlimmerHMM_glimmerT_25277-T1
Valid prediction for snap_scaffold_10-snap.1947-T1
Valid prediction for snap_scaffold_10-snap.1959-T1
Valid prediction for snap_scaffold_10-snap.1965-T1
Valid prediction for snap_scaffold_10-snap.1939-T1
Valid prediction for snap_scaffold_10-snap.1969-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_25291-T1
Valid prediction for snap_scaffold_10-snap.1968-T1
Valid prediction for snap_scaffold_10-snap.1949-T1
Valid prediction for Augustus_model.g16821.t1
Valid prediction for HiQ_model.g16824.t1
Valid prediction for pasa_asmbl_4707.p1
Valid prediction for Augustus_model.g16825.t1
Valid prediction for snap_scaffold_10-snap.1954-T1
Valid prediction for GlimmerHMM_glimmerT_25298-T1
Valid prediction for GlimmerHMM_glimmerT_25292-T1
Valid prediction for snap_scaffold_10-snap.1952-T1
Valid prediction for GlimmerHMM_glimmerT_25274-T1
Valid prediction for snap_scaffold_10-snap.1956-T1
Valid prediction for snap_scaffold_10-snap.1951-T1
Valid prediction for snap_scaffold_10-snap.1946-T1
Valid prediction for GlimmerHMM_glimmerT_25282-T1
Valid prediction for GlimmerHMM_glimmerT_25290-T1
Valid prediction for snap_scaffold_10-snap.1957-T1
Valid prediction for snap_scaffold_10-snap.1967-T1
Valid prediction for GlimmerHMM_glimmerT_25287-T1
Valid prediction for snap_scaffold_10-snap.1958-T1
Valid prediction for snap_scaffold_10-snap.1960-T1
Valid prediction for snap_scaffold_10-snap.1963-T1
Valid prediction for snap_scaffold_10-snap.1948-T1
Valid prediction for Augustus_model.g16826.t1
Valid prediction for GlimmerHMM_glimmerT_25284-T1
Valid prediction for GlimmerHMM_glimmerT_25286-T1
Valid prediction for snap_scaffold_10-snap.1964-T1
Valid prediction for snap_scaffold_10-snap.1941-T1
Valid prediction for GlimmerHMM_glimmerT_25293-T1
Valid prediction for snap_scaffold_10-snap.1940-T1
Valid prediction for GlimmerHMM_glimmerT_25280-T1
Valid prediction for GlimmerHMM_glimmerT_25285-T1
Valid prediction for snap_scaffold_10-snap.1962-T1
Valid prediction for snap_scaffold_10-snap.1943-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6376, rend_intergenic: 4705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12142, rend_intergenic: 7141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15842, rend_intergenic: 12219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51010, rend_intergenic: 43861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73422, rend_intergenic: 68884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84460, rend_intergenic: 82978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112714, rend_intergenic: 99126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141294, rend_intergenic: 134537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157810, rend_intergenic: 152967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168380, rend_intergenic: 163655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190790, rend_intergenic: 169008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194481
-exon list size: 215


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.8    
3.2    
3.7    
4.1    
4.6    
5.1    
5.5    
6.0    
6.5    
6.9    
7.4    
7.8    
8.3    
8.8    
9.2    
9.7    
10.1    
10.6    
11.1    
11.5    
12.0    
12.4    
12.9    
13.4    
13.8    
14.3    
14.7    
15.2    
15.7    
16.1    
16.6    
17.1    
17.5    
18.0    
18.4    
18.9    
19.4    
19.8    
20.3    
20.7    
21.2    
21.7    
22.1    
22.6    
23.0    
23.5    
24.0    
24.4    
24.9    
25.3    
25.8    
26.3    
26.7    
27.2    
27.6    
28.1    
28.6    
29.0    
29.5    
30.0    
30.4    
30.9    
31.3    
31.8    
32.3    
32.7    
33.2    
33.6    
34.1    
34.6    
35.0    
35.5    
35.9    
36.4    
36.9    
37.3    
37.8    
38.2    
38.7    
39.2    
39.6    
40.1    
40.6    
41.0    
41.5    
41.9    
42.4    
42.9    
43.3    
43.8    
44.2    
44.7    
45.2    
45.6    
46.1    
46.5    
47.0    
47.5    
47.9    
48.4    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.6    
52.1    
52.5    
53.0    
53.5    
53.9    
54.4    
54.8    
55.3    
55.8    
56.2    
56.7    
57.1    
57.6    
58.1    
58.5    
59.0    
59.4    
59.9    
60.4    
60.8    
61.3    
61.8    
62.2    
62.7    
63.1    
63.6    
64.1    
64.5    
65.0    
65.4    
65.9    
66.4    
66.8    
67.3    
67.7    
68.2    
68.7    
69.1    
69.6    
70.0    
70.5    
71.0    
71.4    
71.9    
72.4    
72.8    
73.3    
73.7    
74.2    
74.7    
75.1    
75.6    
76.0    
76.5    
77.0    
77.4    
77.9    
78.3    
78.8    
79.3    
79.7    
80.2    
80.6    
81.1    
81.6    
82.0    
82.5    
82.9    
83.4    
83.9    
84.3    
84.8    
85.3    
85.7    
86.2    
86.6    
87.1    
87.6    
88.0    
88.5    
88.9    
89.4    
89.9    
90.3    
90.8    
91.2    
91.7    
92.2    
92.6    
93.1    
93.5    
94.0    
94.5    
94.9    
95.4    
95.9    
96.3    
96.8    
97.2    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 6376, rend_intergenic: 4705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12142, rend_intergenic: 7141  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15842, rend_intergenic: 12219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51010, rend_intergenic: 43861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73422, rend_intergenic: 68884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84460, rend_intergenic: 82978  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112714, rend_intergenic: 99126  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141294, rend_intergenic: 134537  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157810, rend_intergenic: 152967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168380, rend_intergenic: 163655  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190790, rend_intergenic: 169008  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support