-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_8772547-9132157

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_25154-T1
Valid prediction for CodingQuarry_transcript_5514-T1
Valid prediction for snap_scaffold_10-snap.1738-T1
Valid prediction for snap_scaffold_10-snap.1764-T1
Valid prediction for Augustus_model.g16747.t1
Valid prediction for pasa_asmbl_3368.p1
Valid prediction for GlimmerHMM_glimmerT_25143-T1
Valid prediction for HiQ_model.g16754.t1
Valid prediction for Augustus_model.g16738.t1
Valid prediction for pasa_asmbl_3366.p1
Valid prediction for snap_scaffold_10-snap.1732-T1
Valid prediction for Augustus_model.g16749.t1
Couldn't classify 229234, 229287
Sorry, prediction pasa_asmbl_3350.p1 fails validation.
(ATG)	 AC	228064-228117	GT	AGG
(TTT)	 AG	228568-228729	GT	TTG
(GAT)	 AG	228811-228849	GT	AGG
(GTG)	 AG	228972-229079	GT	AGG
(CTT)	 AG	229234-229287	CG	CAC
-recovered pasa_asmbl_3350.p1, initial, 228064, 228117
-recovered pasa_asmbl_3350.p1, internal, 228568, 228729
-recovered pasa_asmbl_3350.p1, internal, 228811, 228849
-recovered pasa_asmbl_3350.p1, internal, 228972, 229079
Valid prediction for Augustus_model.g16757.t1
Valid prediction for snap_scaffold_10-snap.1751-T1
Valid prediction for GlimmerHMM_glimmerT_25149-T1
Valid prediction for GlimmerHMM_glimmerT_25152-T1
Valid prediction for snap_scaffold_10-snap.1748-T1
Valid prediction for Augustus_model.g16761.t1
Valid prediction for GlimmerHMM_glimmerT_25145-T1
Valid prediction for snap_scaffold_10-snap.1749-T1
Couldn't classify 230153, 230237
Sorry, prediction pasa_asmbl_3352.p1 fails validation.
(AGT)	 AG	230153-230237	GT	AGG
(TTC)	 AG	230448-230595	GT	AAG
(GAT)	 AG	230803-230879	GT	AGG
(GCT)	 AG	231111-231146	GT	GAG
(CTT)	 AG	231661-231707	AT	GAA
-recovered pasa_asmbl_3352.p1, terminal, 231661, 231707
-recovered pasa_asmbl_3352.p1, internal, 230153, 230237
-recovered pasa_asmbl_3352.p1, internal, 230448, 230595
-recovered pasa_asmbl_3352.p1, internal, 230803, 230879
-recovered pasa_asmbl_3352.p1, internal, 231111, 231146
Valid prediction for CodingQuarry_transcript_5519-T1
Valid prediction for snap_scaffold_10-snap.1724-T1
Valid prediction for HiQ_model.g16743.t1
Valid prediction for CodingQuarry_transcript_5507-T1
Valid prediction for snap_scaffold_10-snap.1766-T1
Valid prediction for Augustus_model.g16745.t1
Valid prediction for snap_scaffold_10-snap.1725-T1
Valid prediction for snap_scaffold_10-snap.1739-T1
Valid prediction for GlimmerHMM_glimmerT_25156-T1
Valid prediction for snap_scaffold_10-snap.1743-T1
Valid prediction for Augustus_model.g16750.t1
Valid prediction for GlimmerHMM_glimmerT_25167-T1
Valid prediction for snap_scaffold_10-snap.1736-T1
Valid prediction for CodingQuarry_transcript_5517-T1
Valid prediction for Augustus_model.g16746.t1
Valid prediction for snap_scaffold_10-snap.1754-T1
Valid prediction for snap_scaffold_10-snap.1752-T1
Valid prediction for GlimmerHMM_glimmerT_25164-T1
Valid prediction for CodingQuarry_transcript_5506-T1
Valid prediction for snap_scaffold_10-snap.1763-T1
Valid prediction for snap_scaffold_10-snap.1753-T1
Valid prediction for Augustus_model.g16741.t1
Couldn't classify 4813, 4953
Sorry, prediction pasa_asmbl_3333.p2 fails validation.
(TAC)	 GG	4813-4953	GC	ATG
(ATC)	 AG	5161-5253	GT	TGG
(TGT)	 AG	5615-5731	GT	AGG
(GAG)	 AG	5839-6049	GT	AGG
(GCT)	 AG	6177-6487	TG	AGT
-recovered pasa_asmbl_3333.p2, terminal, 6177, 6487
-recovered pasa_asmbl_3333.p2, internal, 5161, 5253
-recovered pasa_asmbl_3333.p2, internal, 5615, 5731
-recovered pasa_asmbl_3333.p2, internal, 5839, 6049
Valid prediction for snap_scaffold_10-snap.1744-T1
Valid prediction for snap_scaffold_10-snap.1747-T1
Valid prediction for GlimmerHMM_glimmerT_25172-T1
Valid prediction for snap_scaffold_10-snap.1728-T1
Valid prediction for snap_scaffold_10-snap.1773-T1
Valid prediction for snap_scaffold_10-snap.1746-T1
Valid prediction for GlimmerHMM_glimmerT_25141-T1
Couldn't classify 257507, 257608
Sorry, prediction pasa_asmbl_3356.p1 fails validation.
(TGT)	 CA	257507-257608	GT	TGG
(GAG)	 AG	257937-258070	GT	AGG
(CGT)	 AG	258614-258811	GT	AGG
(GTT)	 AG	260369-260606	GT	AGG
(GTA)	 AG	261384-261524	GT	AGG
(ATA)	 AG	262850-263004	GT	AGG
(GTG)	 AG	263173-263332	GA	GAG
-recovered pasa_asmbl_3356.p1, terminal, 263173, 263332
-recovered pasa_asmbl_3356.p1, internal, 257937, 258070
-recovered pasa_asmbl_3356.p1, internal, 258614, 258811
-recovered pasa_asmbl_3356.p1, internal, 260369, 260606
-recovered pasa_asmbl_3356.p1, internal, 261384, 261524
-recovered pasa_asmbl_3356.p1, internal, 262850, 263004
Couldn't classify 4420, 4463
Sorry, prediction pasa_asmbl_3331.p1 fails validation.
(ATG)	 GT	2625-2690	GT	AGG
(TTG)	 AG	2957-3045	GT	AGG
(GGC)	 AG	3475-3562	GT	AGG
(GAT)	 AG	3750-3827	GT	AGG
(GGT)	 AG	4014-4101	GT	TGG
(GTC)	 AG	4420-4463	CC	GCC
-recovered pasa_asmbl_3331.p1, initial, 2625, 2690
-recovered pasa_asmbl_3331.p1, internal, 2957, 3045
-recovered pasa_asmbl_3331.p1, internal, 3475, 3562
-recovered pasa_asmbl_3331.p1, internal, 3750, 3827
-recovered pasa_asmbl_3331.p1, internal, 4014, 4101
Valid prediction for pasa_asmbl_3367.p1
Valid prediction for GlimmerHMM_glimmerT_25161-T1
Valid prediction for CodingQuarry_transcript_5510-T1
Valid prediction for pasa_asmbl_3347.p1
Valid prediction for pasa_asmbl_3345.p1
Valid prediction for Augustus_model.g16731.t1
Valid prediction for CodingQuarry_transcript_5508-T1
Valid prediction for snap_scaffold_10-snap.1717-T1
Valid prediction for snap_scaffold_10-snap.1770-T1
Valid prediction for GlimmerHMM_glimmerT_25155-T1
Valid prediction for Augustus_model.g16753.t1
Valid prediction for HiQ_model.g16744.t1
Valid prediction for snap_scaffold_10-snap.1721-T1
Valid prediction for snap_scaffold_10-snap.1762-T1
Valid prediction for GlimmerHMM_glimmerT_25163-T1
Valid prediction for snap_scaffold_10-snap.1741-T1
Valid prediction for snap_scaffold_10-snap.1723-T1
Valid prediction for snap_scaffold_10-snap.1742-T1
Valid prediction for snap_scaffold_10-snap.1714-T1
Valid prediction for snap_scaffold_10-snap.1768-T1
Valid prediction for snap_scaffold_10-snap.1733-T1
Valid prediction for pasa_asmbl_3342.p1
Valid prediction for GlimmerHMM_glimmerT_25160-T1
Valid prediction for snap_scaffold_10-snap.1718-T1
Valid prediction for GlimmerHMM_glimmerT_25169-T1
Valid prediction for pasa_asmbl_3358.p1
Valid prediction for HiQ_model.g16759.t1
Valid prediction for snap_scaffold_10-snap.1740-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_25146-T1
Valid prediction for GlimmerHMM_glimmerT_25159-T1
Valid prediction for CodingQuarry_transcript_5513-T1
Valid prediction for Augustus_model.g16740.t1
Valid prediction for Augustus_model.g16734.t1
Valid prediction for GlimmerHMM_glimmerT_25162-T1
Valid prediction for snap_scaffold_10-snap.1737-T1
Valid prediction for snap_scaffold_10-snap.1757-T1
Valid prediction for GlimmerHMM_glimmerT_25175-T1
Valid prediction for snap_scaffold_10-snap.1758-T1
Valid prediction for Augustus_model.g16760.t1
Valid prediction for GlimmerHMM_glimmerT_25174-T1
Valid prediction for snap_scaffold_10-snap.1761-T1
Valid prediction for Augustus_model.g16732.t1
Valid prediction for GlimmerHMM_glimmerT_25170-T1
Valid prediction for snap_scaffold_10-snap.1759-T1
Valid prediction for HiQ_model.g16735.t1
Valid prediction for snap_scaffold_10-snap.1760-T1
Valid prediction for CodingQuarry_transcript_5505-T1
Valid prediction for GlimmerHMM_glimmerT_25158-T1
Valid prediction for CodingQuarry_transcript_5515-T1
Valid prediction for Augustus_model.g16756.t1
Valid prediction for snap_scaffold_10-snap.1750-T1
Valid prediction for GlimmerHMM_glimmerT_25148-T1
Valid prediction for GlimmerHMM_glimmerT_25147-T1
Valid prediction for GlimmerHMM_glimmerT_25150-T1
Valid prediction for HiQ_model.g16742.t1
Couldn't classify 60769, 60997
Sorry, prediction pasa_asmbl_4673.p1 fails validation.
(CCG)	 CC	60769-60997	GT	ACG
(GGC)	 AG	62071-64538	TT	AGT
-recovered pasa_asmbl_4673.p1, terminal, 62071, 64538
Valid prediction for Augustus_model.g16739.t1
Valid prediction for pasa_asmbl_4622.p1
Valid prediction for HiQ_model.g16751.t1
Couldn't classify 335334, 335358
Couldn't classify 347667, 347796
Sorry, prediction pasa_asmbl_4615.p1 fails validation.
(GCT)	 TA	335334-335358	GT	AGG
(GCT)	 AG	337615-337765	GT	CTG
(GCG)	 AG	337971-338045	GT	ATG
(TAA)	 AG	338333-338476	GT	TTG
(GAT)	 AG	338635-338778	GT	CTG
(GAA)	 AG	338927-339093	GT	TGG
(GTA)	 AG	339364-339496	GT	CTG
(GTA)	 AG	340034-340102	GT	ATG
(AAT)	 AG	341019-341090	GT	CTG
(ATC)	 AG	341221-341292	GT	CTG
(GGC)	 AG	341409-341572	GT	AGG
(GTC)	 AG	342342-342466	GT	AGG
(GGC)	 AG	342691-342788	GT	TGG
(GTG)	 AG	343612-343751	GT	TGG
(GTG)	 AG	345696-345789	GT	AAG
(GTG)	 AG	346620-346757	GT	AGG
(CGG)	 AG	346934-347174	GT	AGG
(ATT)	 AG	347403-347533	GT	AGG
(TGT)	 AG	347667-347796	AT	GCA
add_exon() Sorry, pasa_asmbl_4615.p1 345696-345789-terminal-3 is invalid.
-recovered pasa_asmbl_4615.p1, terminal, 345696, 345789
-recovered pasa_asmbl_4615.p1, internal, 337615, 337765
-recovered pasa_asmbl_4615.p1, internal, 337971, 338045
-recovered pasa_asmbl_4615.p1, internal, 338333, 338476
-recovered pasa_asmbl_4615.p1, internal, 338635, 338778
-recovered pasa_asmbl_4615.p1, internal, 338927, 339093
-recovered pasa_asmbl_4615.p1, internal, 339364, 339496
-recovered pasa_asmbl_4615.p1, internal, 340034, 340102
-recovered pasa_asmbl_4615.p1, internal, 341019, 341090
-recovered pasa_asmbl_4615.p1, internal, 341221, 341292
-recovered pasa_asmbl_4615.p1, internal, 341409, 341572
-recovered pasa_asmbl_4615.p1, internal, 342342, 342466
-recovered pasa_asmbl_4615.p1, internal, 342691, 342788
-recovered pasa_asmbl_4615.p1, internal, 343612, 343751
-recovered pasa_asmbl_4615.p1, internal, 345696, 345789
-recovered pasa_asmbl_4615.p1, internal, 346620, 346757
-recovered pasa_asmbl_4615.p1, internal, 346934, 347174
-recovered pasa_asmbl_4615.p1, internal, 347403, 347533
Couldn't classify 348064, 348299
Sorry, prediction pasa_asmbl_4614.p1 fails validation.
(TTC)	 GC	348064-348299	GT	AAG
(ATG)	 AG	348641-348855	GT	AGG
(AGG)	 AG	349854-350116	AG	AAA
add_exon() Sorry, pasa_asmbl_4614.p1 348641-348855-initial-1 is invalid.
-recovered pasa_asmbl_4614.p1, initial, 348641, 348855
-recovered pasa_asmbl_4614.p1, terminal, 349854, 350116
-recovered pasa_asmbl_4614.p1, internal, 348641, 348855
Valid prediction for GlimmerHMM_glimmerT_25151-T1
Valid prediction for Augustus_model.g16737.t1
Valid prediction for CodingQuarry_transcript_5504-T1
Valid prediction for snap_scaffold_10-snap.1720-T1
Valid prediction for snap_scaffold_10-snap.1735-T1
Valid prediction for Augustus_model.g16748.t1
Valid prediction for GlimmerHMM_glimmerT_25165-T1
Valid prediction for snap_scaffold_10-snap.1769-T1
Valid prediction for pasa_asmbl_4654.p1
Couldn't classify 43090, 43280
Sorry, prediction pasa_asmbl_4677.p1 fails validation.
(ATG)	 AA	39166-39227	GT	GGG
(AAA)	 AG	40194-40542	GT	AGG
(ATC)	 AG	40829-41022	GT	AAG
(GTA)	 AG	41217-41376	GT	AGG
(GTC)	 AG	41636-41854	GT	AGG
(GAA)	 AG	42090-42257	GT	AGG
(GTT)	 AG	42392-42478	GT	AGG
(GTG)	 AG	42594-42743	GT	AGG
(GAC)	 AG	42885-42993	GT	AGG
(CCC)	 AG	43090-43280	GG	CAG
-recovered pasa_asmbl_4677.p1, initial, 39166, 39227
-recovered pasa_asmbl_4677.p1, internal, 40194, 40542
-recovered pasa_asmbl_4677.p1, internal, 40829, 41022
-recovered pasa_asmbl_4677.p1, internal, 41217, 41376
-recovered pasa_asmbl_4677.p1, internal, 41636, 41854
-recovered pasa_asmbl_4677.p1, internal, 42090, 42257
-recovered pasa_asmbl_4677.p1, internal, 42392, 42478
-recovered pasa_asmbl_4677.p1, internal, 42594, 42743
-recovered pasa_asmbl_4677.p1, internal, 42885, 42993
Valid prediction for GlimmerHMM_glimmerT_25157-T1
Valid prediction for GlimmerHMM_glimmerT_25171-T1
Valid prediction for snap_scaffold_10-snap.1734-T1
Valid prediction for CodingQuarry_transcript_5518-T1
Couldn't classify 122598, 122732
Sorry, prediction pasa_asmbl_4655.p1 fails validation.
(CGG)	 CA	122598-122732	GT	AGG
(GAG)	 AG	122889-122978	GT	AGG
(GAT)	 AG	123080-123241	GT	AAG
(GTG)	 AG	123368-123513	GT	TGG
(GGA)	 AG	123727-123862	GT	TGG
(CTA)	 AG	124052-124171	GG	AGG
-recovered pasa_asmbl_4655.p1, terminal, 124052, 124171
-recovered pasa_asmbl_4655.p1, internal, 122889, 122978
-recovered pasa_asmbl_4655.p1, internal, 123080, 123241
-recovered pasa_asmbl_4655.p1, internal, 123368, 123513
-recovered pasa_asmbl_4655.p1, internal, 123727, 123862
Valid prediction for snap_scaffold_10-snap.1722-T1
Valid prediction for Augustus_model.g16733.t1
Valid prediction for snap_scaffold_10-snap.1745-T1
Valid prediction for snap_scaffold_10-snap.1756-T1
Valid prediction for pasa_asmbl_4646.p1
Valid prediction for CodingQuarry_transcript_5520-T1
Valid prediction for GlimmerHMM_glimmerT_25166-T1
Valid prediction for Augustus_model.g16752.t1
Couldn't classify 125788, 125924
Sorry, prediction CodingQuarry_transcript_5512-T1 fails validation.
(ATG)	 AG	125314-125695	GT	TGG
(GCA)	 AT	125788-125924	TA	GAT
-recovered CodingQuarry_transcript_5512-T1, initial, 125314, 125695
-recovered CodingQuarry_transcript_5512-T1, internal, 125314, 125695
Valid prediction for GlimmerHMM_glimmerT_25173-T1
Couldn't classify 44481, 44513
Sorry, prediction pasa_asmbl_4675.p1 fails validation.
(CGC)	 CT	44481-44513	GT	AGG
(GTA)	 AG	44999-45168	GT	TGG
(GTT)	 AG	45372-45489	GC	GAG
-recovered pasa_asmbl_4675.p1, terminal, 45372, 45489
-recovered pasa_asmbl_4675.p1, internal, 44999, 45168
-recovered pasa_asmbl_4675.p1, internal, 45372, 45489
Valid prediction for pasa_asmbl_4662.p1
Valid prediction for HiQ_model.g16758.t1
Valid prediction for snap_scaffold_10-snap.1755-T1
Valid prediction for snap_scaffold_10-snap.1727-T1
Valid prediction for snap_scaffold_10-snap.1716-T1
Valid prediction for snap_scaffold_10-snap.1765-T1
Valid prediction for snap_scaffold_10-snap.1726-T1
Valid prediction for GlimmerHMM_glimmerT_25144-T1
Valid prediction for Augustus_model.g16755.t1
Valid prediction for GlimmerHMM_glimmerT_25142-T1
Valid prediction for snap_scaffold_10-snap.1729-T1
Valid prediction for GlimmerHMM_glimmerT_25168-T1
Valid prediction for GlimmerHMM_glimmerT_25153-T1
Couldn't classify 219144, 220118
Sorry, prediction pasa_asmbl_4645.p2 fails validation.
(ATG)	 CA	219144-220118	TT	CGT
Valid prediction for Augustus_model.g16736.t1
Valid prediction for pasa_asmbl_4659.p1
Valid prediction for snap_scaffold_10-snap.1730-T1
Valid prediction for snap_scaffold_10-snap.1767-T1
Valid prediction for snap_scaffold_10-snap.1731-T1
Couldn't classify 33736, 33828
Sorry, prediction pasa_asmbl_4678.p1 fails validation.
(GAT)	 CA	33736-33828	GT	AGG
(ACC)	 AG	34270-34377	GT	AGG
(GCC)	 AG	34523-34705	GT	AGG
(GCT)	 AG	34958-35051	GT	AGG
(AAT)	 AG	35164-35279	GT	TGG
(CTA)	 AG	35399-35518	CC	GAC
-recovered pasa_asmbl_4678.p1, terminal, 35399, 35518
-recovered pasa_asmbl_4678.p1, internal, 34270, 34377
-recovered pasa_asmbl_4678.p1, internal, 34523, 34705
-recovered pasa_asmbl_4678.p1, internal, 34958, 35051
-recovered pasa_asmbl_4678.p1, internal, 35164, 35279
Valid prediction for snap_scaffold_10-snap.1771-T1
Valid prediction for snap_scaffold_10-snap.1715-T1
Valid prediction for snap_scaffold_10-snap.1719-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 38817, rend_intergenic: 16750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55231, rend_intergenic: 38919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67264, rend_intergenic: 55352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89501, rend_intergenic: 69200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115505, rend_intergenic: 93615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 329512, rend_intergenic: 324911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 337416, rend_intergenic: 330522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 359611
-exon list size: 605


building trellis

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26.0    
26.2    
26.4    
26.5    
26.7    
26.9    
27.0    
27.2    
27.3    
27.5    
27.7    
27.8    
28.0    
28.2    
28.3    
28.5    
28.7    
28.8    
29.0    
29.2    
29.3    
29.5    
29.7    
29.8    
30.0    
30.1    
30.3    
30.5    
30.6    
30.8    
31.0    
31.1    
31.3    
31.5    
31.6    
31.8    
32.0    
32.1    
32.3    
32.5    
32.6    
32.8    
32.9    
33.1    
33.3    
33.4    
33.6    
33.8    
33.9    
34.1    
34.3    
34.4    
34.6    
34.8    
34.9    
35.1    
35.3    
35.4    
35.6    
35.7    
35.9    
36.1    
36.2    
36.4    
36.6    
36.7    
36.9    
37.1    
37.2    
37.4    
37.6    
37.7    
37.9    
38.1    
38.2    
38.4    
38.6    
38.7    
38.9    
39.0    
39.2    
39.4    
39.5    
39.7    
39.9    
40.0    
40.2    
40.4    
40.5    
40.7    
40.9    
41.0    
41.2    
41.4    
41.5    
41.7    
41.8    
42.0    
42.2    
42.3    
42.5    
42.7    
42.8    
43.0    
43.2    
43.3    
43.5    
43.7    
43.8    
44.0    
44.2    
44.3    
44.5    
44.6    
44.8    
45.0    
45.1    
45.3    
45.5    
45.6    
45.8    
46.0    
46.1    
46.3    
46.5    
46.6    
46.8    
47.0    
47.1    
47.3    
47.4    
47.6    
47.8    
47.9    
48.1    
48.3    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.4    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.6    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.7    
51.9    
52.1    
52.2    
52.4    
52.6    
52.7    
52.9    
53.0    
53.2    
53.4    
53.5    
53.7    
53.9    
54.0    
54.2    
54.4    
54.5    
54.7    
54.9    
55.0    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.7    
56.8    
57.0    
57.2    
57.3    
57.5    
57.7    
57.8    
58.0    
58.2    
58.3    
58.5    
58.6    
58.8    
59.0    
59.1    
59.3    
59.5    
59.6    
59.8    
60.0    
60.1    
60.3    
60.5    
60.6    
60.8    
61.0    
61.1    
61.3    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.4    
62.6    
62.8    
62.9    
63.1    
63.3    
63.4    
63.6    
63.8    
63.9    
64.1    
64.3    
64.4    
64.6    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.7    
65.9    
66.1    
66.2    
66.4    
66.6    
66.7    
66.9    
67.1    
67.2    
67.4    
67.5    
67.7    
67.9    
68.0    
68.2    
68.4    
68.5    
68.7    
68.9    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.0    
70.2    
70.3    
70.5    
70.7    
70.8    
71.0    
71.2    
71.3    
71.5    
71.7    
71.8    
72.0    
72.2    
72.3    
72.5    
72.7    
72.8    
73.0    
73.1    
73.3    
73.5    
73.6    
73.8    
74.0    
74.1    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.6    
75.8    
75.9    
76.1    
76.3    
76.4    
76.6    
76.8    
76.9    
77.1    
77.3    
77.4    
77.6    
77.8    
77.9    
78.1    
78.3    
78.4    
78.6    
78.7    
78.9    
79.1    
79.2    
79.4    
79.6    
79.7    
79.9    
80.1    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.9    
82.0    
82.2    
82.4    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.5    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.7    
84.8    
85.0    
85.2    
85.3    
85.5    
85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.7    
86.8    
87.0    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.1    
88.3    
88.5    
88.6    
88.8    
89.0    
89.1    
89.3    
89.5    
89.6    
89.8    
90.0    
90.1    
90.3    
90.4    
90.6    
90.8    
90.9    
91.1    
91.3    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.4    
92.6    
92.8    
92.9    
93.1    
93.2    
93.4    
93.6    
93.7    
93.9    
94.1    
94.2    
94.4    
94.6    
94.7    
94.9    
95.1    
95.2    
95.4    
95.6    
95.7    
95.9    
96.0    
96.2    
96.4    
96.5    
96.7    
96.9    
97.0    
97.2    
97.4    
97.5    
97.7    
97.9    
98.0    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 38817, rend_intergenic: 16750  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55231, rend_intergenic: 38919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67264, rend_intergenic: 55352  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89501, rend_intergenic: 69200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115505, rend_intergenic: 93615  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 329512, rend_intergenic: 324911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 337416, rend_intergenic: 330522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 343153 - 359611
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 348751 - 359611
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support