-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_8020455-8282141

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_25064-T1
Valid prediction for snap_scaffold_10-snap.1620-T1
Valid prediction for GlimmerHMM_glimmerT_25057-T1
Valid prediction for snap_scaffold_10-snap.1612-T1
Valid prediction for GlimmerHMM_glimmerT_25065-T1
Couldn't classify 139889, 140029
Sorry, prediction pasa_asmbl_3311.p1 fails validation.
(TGT)	 TG	139889-140029	GT	GGG
(TTG)	 AG	142332-142619	AA	AGA
-recovered pasa_asmbl_3311.p1, terminal, 142332, 142619
Valid prediction for GlimmerHMM_glimmerT_25054-T1
Valid prediction for GlimmerHMM_glimmerT_25066-T1
Valid prediction for snap_scaffold_10-snap.1622-T1
Valid prediction for snap_scaffold_10-snap.1611-T1
Valid prediction for GlimmerHMM_glimmerT_25069-T1
Valid prediction for snap_scaffold_10-snap.1625-T1
Valid prediction for HiQ_model.g16693.t1
Valid prediction for snap_scaffold_10-snap.1600-T1
Valid prediction for GlimmerHMM_glimmerT_25072-T1
Valid prediction for GlimmerHMM_glimmerT_25061-T1
Valid prediction for snap_scaffold_10-snap.1616-T1
Valid prediction for snap_scaffold_10-snap.1606-T1
Valid prediction for snap_scaffold_10-snap.1624-T1
Valid prediction for snap_scaffold_10-snap.1596-T1
Valid prediction for snap_scaffold_10-snap.1617-T1
Valid prediction for snap_scaffold_10-snap.1597-T1
Valid prediction for snap_scaffold_10-snap.1614-T1
Valid prediction for snap_scaffold_10-snap.1604-T1
Couldn't classify 118586, 118678
Couldn't classify 121108, 121307
Sorry, prediction pasa_asmbl_3310.p1 fails validation.
(GTG)	 AG	118586-118678	GT	AGG
(GTG)	 AG	120035-120191	GT	AGG
(AGA)	 AG	121108-121307	GG	CAG
-recovered pasa_asmbl_3310.p1, internal, 118586, 118678
-recovered pasa_asmbl_3310.p1, internal, 120035, 120191
Valid prediction for GlimmerHMM_glimmerT_25067-T1
Valid prediction for snap_scaffold_10-snap.1623-T1
Valid prediction for GlimmerHMM_glimmerT_25062-T1
Valid prediction for GlimmerHMM_glimmerT_25060-T1
Valid prediction for snap_scaffold_10-snap.1621-T1
Valid prediction for GlimmerHMM_glimmerT_25052-T1
Valid prediction for snap_scaffold_10-snap.1610-T1
Valid prediction for snap_scaffold_10-snap.1629-T1
Valid prediction for snap_scaffold_10-snap.1608-T1
Valid prediction for snap_scaffold_10-snap.1598-T1
Valid prediction for Augustus_model.g16692.t1
Valid prediction for snap_scaffold_10-snap.1601-T1
Valid prediction for GlimmerHMM_glimmerT_25073-T1
Valid prediction for Augustus_model.g16691.t1
Valid prediction for snap_scaffold_10-snap.1602-T1
Valid prediction for GlimmerHMM_glimmerT_25056-T1
Valid prediction for Augustus_model.g16694.t1
Valid prediction for snap_scaffold_10-snap.1630-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_25053-T1
Valid prediction for snap_scaffold_10-snap.1628-T1
Valid prediction for GlimmerHMM_glimmerT_25075-T1
Valid prediction for GlimmerHMM_glimmerT_25063-T1
Valid prediction for GlimmerHMM_glimmerT_25074-T1
Valid prediction for GlimmerHMM_glimmerT_25068-T1
Valid prediction for snap_scaffold_10-snap.1603-T1
Couldn't classify 199664, 200560
Sorry, prediction pasa_asmbl_4568.p1 fails validation.
(GAG)	 CA	199664-200560	GG	ACG
Valid prediction for snap_scaffold_10-snap.1627-T1
Valid prediction for GlimmerHMM_glimmerT_25055-T1
Valid prediction for snap_scaffold_10-snap.1615-T1
Valid prediction for GlimmerHMM_glimmerT_25059-T1
Valid prediction for GlimmerHMM_glimmerT_25070-T1
Valid prediction for GlimmerHMM_glimmerT_25058-T1
Valid prediction for GlimmerHMM_glimmerT_25076-T1
Valid prediction for snap_scaffold_10-snap.1605-T1
Valid prediction for snap_scaffold_10-snap.1613-T1
Valid prediction for snap_scaffold_10-snap.1609-T1
Valid prediction for snap_scaffold_10-snap.1595-T1
Valid prediction for GlimmerHMM_glimmerT_25071-T1
Valid prediction for GlimmerHMM_glimmerT_25051-T1
Valid prediction for snap_scaffold_10-snap.1599-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g16690.t1
Valid prediction for snap_scaffold_10-snap.1619-T1
Valid prediction for snap_scaffold_10-snap.1618-T1
Valid prediction for snap_scaffold_10-snap.1626-T1
Valid prediction for snap_scaffold_10-snap.1607-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21462, rend_intergenic: 16832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23676, rend_intergenic: 21464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49254, rend_intergenic: 43963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50733, rend_intergenic: 49330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56611, rend_intergenic: 53208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61574, rend_intergenic: 60957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62570, rend_intergenic: 62367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77632, rend_intergenic: 75986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79430, rend_intergenic: 78707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101397, rend_intergenic: 94504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213948, rend_intergenic: 209504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 261687
-exon list size: 207


building trellis

0.5    
1.0    
1.4    
1.9    
2.4    
2.9    
3.3    
3.8    
4.3    
4.8    
5.3    
5.7    
6.2    
6.7    
7.2    
7.7    
8.1    
8.6    
9.1    
9.6    
10.0    
10.5    
11.0    
11.5    
12.0    
12.4    
12.9    
13.4    
13.9    
14.4    
14.8    
15.3    
15.8    
16.3    
16.7    
17.2    
17.7    
18.2    
18.7    
19.1    
19.6    
20.1    
20.6    
21.1    
21.5    
22.0    
22.5    
23.0    
23.4    
23.9    
24.4    
24.9    
25.4    
25.8    
26.3    
26.8    
27.3    
27.8    
28.2    
28.7    
29.2    
29.7    
30.1    
30.6    
31.1    
31.6    
32.1    
32.5    
33.0    
33.5    
34.0    
34.4    
34.9    
35.4    
35.9    
36.4    
36.8    
37.3    
37.8    
38.3    
38.8    
39.2    
39.7    
40.2    
40.7    
41.1    
41.6    
42.1    
42.6    
43.1    
43.5    
44.0    
44.5    
45.0    
45.5    
45.9    
46.4    
46.9    
47.4    
47.8    
48.3    
48.8    
49.3    
49.8    
50.2    
50.7    
51.2    
51.7    
52.2    
52.6    
53.1    
53.6    
54.1    
54.5    
55.0    
55.5    
56.0    
56.5    
56.9    
57.4    
57.9    
58.4    
58.9    
59.3    
59.8    
60.3    
60.8    
61.2    
61.7    
62.2    
62.7    
63.2    
63.6    
64.1    
64.6    
65.1    
65.6    
66.0    
66.5    
67.0    
67.5    
67.9    
68.4    
68.9    
69.4    
69.9    
70.3    
70.8    
71.3    
71.8    
72.2    
72.7    
73.2    
73.7    
74.2    
74.6    
75.1    
75.6    
76.1    
76.6    
77.0    
77.5    
78.0    
78.5    
78.9    
79.4    
79.9    
80.4    
80.9    
81.3    
81.8    
82.3    
82.8    
83.3    
83.7    
84.2    
84.7    
85.2    
85.6    
86.1    
86.6    
87.1    
87.6    
88.0    
88.5    
89.0    
89.5    
90.0    
90.4    
90.9    
91.4    
91.9    
92.3    
92.8    
93.3    
93.8    
94.3    
94.7    
95.2    
95.7    
96.2    
96.7    
97.1    
97.6    
98.1    
98.6    
99.0    
99.5    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 21462, rend_intergenic: 16832  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23676, rend_intergenic: 21464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49254, rend_intergenic: 43963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50733, rend_intergenic: 49330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56611, rend_intergenic: 53208  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61574, rend_intergenic: 60957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62570, rend_intergenic: 62367  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77632, rend_intergenic: 75986  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79430, rend_intergenic: 78707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101397, rend_intergenic: 94504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213948, rend_intergenic: 209504  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14970
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10124
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 228148 - 261687
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 228148 - 243746
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 229126 - 243746
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 231632 - 243746
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 243811 - 261687
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 243811 - 254521