-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_2997211-3179271

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 31233, 31382
Couldn't classify 33809, 33880
Sorry, prediction pasa_asmbl_3844.p1 fails validation.
(CCC)	 CC	31233-31382	GT	TGG
(GGC)	 AG	31474-31521	GT	TGG
(GGC)	 AG	31617-31784	GT	AGG
(GGA)	 AG	32243-32344	GT	CTG
(ATT)	 AG	32529-32585	GT	AGG
(AGC)	 AG	32747-32870	GT	AGG
(GCA)	 AG	32968-33111	GT	AGG
(CCT)	 AG	33597-33688	GT	AGG
(ATG)	 AG	33809-33880	GT	AGG
-recovered pasa_asmbl_3844.p1, initial, 33809, 33880
-recovered pasa_asmbl_3844.p1, internal, 31474, 31521
-recovered pasa_asmbl_3844.p1, internal, 31617, 31784
-recovered pasa_asmbl_3844.p1, internal, 32243, 32344
-recovered pasa_asmbl_3844.p1, internal, 32529, 32585
-recovered pasa_asmbl_3844.p1, internal, 32747, 32870
-recovered pasa_asmbl_3844.p1, internal, 32968, 33111
-recovered pasa_asmbl_3844.p1, internal, 33597, 33688
-recovered pasa_asmbl_3844.p1, internal, 33809, 33880
Valid prediction for HiQ_model.g16237.t1
Valid prediction for pasa_asmbl_3022.p1
Valid prediction for snap_scaffold_10-snap.680-T1
Valid prediction for GlimmerHMM_glimmerT_24352-T1
Valid prediction for GlimmerHMM_glimmerT_24373-T1
Valid prediction for Augustus_model.g16230.t1
Valid prediction for CodingQuarry_transcript_5324-T1
Valid prediction for HiQ_model.g16220.t1
Valid prediction for snap_scaffold_10-snap.683-T1
Valid prediction for snap_scaffold_10-snap.675-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_10-snap.678-T1
Valid prediction for GlimmerHMM_glimmerT_24367-T1
Valid prediction for Augustus_model.g16219.t1
Valid prediction for snap_scaffold_10-snap.668-T1
Valid prediction for snap_scaffold_10-snap.657-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for HiQ_model.g16236.t1
Valid prediction for snap_scaffold_10-snap.673-T1
Valid prediction for Augustus_model.g16231.t1
Valid prediction for GlimmerHMM_glimmerT_24360-T1
Valid prediction for snap_scaffold_10-snap.648-T1
Valid prediction for Augustus_model.g16218.t1
Valid prediction for snap_scaffold_10-snap.656-T1
Valid prediction for GlimmerHMM_glimmerT_24356-T1
Valid prediction for snap_scaffold_10-snap.650-T1
Valid prediction for GlimmerHMM_glimmerT_24365-T1
Valid prediction for pasa_asmbl_3030.p1
Couldn't classify 21353, 23557
Sorry, prediction pasa_asmbl_3018.p1 fails validation.
(CCA)	 AG	21353-23557	GT	GTG
-recovered pasa_asmbl_3018.p1, internal, 21353, 23557
Valid prediction for GlimmerHMM_glimmerT_24363-T1
Valid prediction for GlimmerHMM_glimmerT_24377-T1
Valid prediction for GlimmerHMM_glimmerT_24364-T1
Valid prediction for GlimmerHMM_glimmerT_24354-T1
Valid prediction for GlimmerHMM_glimmerT_24357-T1
Valid prediction for snap_scaffold_10-snap.661-T1
Valid prediction for Augustus_model.g16223.t1
Valid prediction for CodingQuarry_transcript_5317-T1
Valid prediction for GlimmerHMM_glimmerT_24379-T1
Valid prediction for pasa_asmbl_3032.p2
Valid prediction for GlimmerHMM_glimmerT_24349-T1
Valid prediction for snap_scaffold_10-snap.646-T1
Valid prediction for GlimmerHMM_glimmerT_24378-T1
Valid prediction for GlimmerHMM_glimmerT_24353-T1
Valid prediction for snap_scaffold_10-snap.670-T1
Valid prediction for GlimmerHMM_glimmerT_24366-T1
Valid prediction for snap_scaffold_10-snap.666-T1
Couldn't classify 29633, 29908
Sorry, prediction pasa_asmbl_3020.p1 fails validation.
(ATG)	 AC	26847-26852	GT	AGG
(ACC)	 AG	27308-27369	GT	AGG
(GGA)	 AG	27653-27791	GT	GGG
(ACC)	 AG	27899-28141	GC	AGG
(GAT)	 AG	28270-28367	GT	AGG
(GTT)	 AG	28710-28791	GT	CGG
(TGT)	 AG	28941-29058	GT	GGG
(CTT)	 AG	29157-29268	GT	AGG
(CCT)	 AG	29393-29498	GT	AGG
(GTG)	 AG	29633-29908	GG	CAG
-recovered pasa_asmbl_3020.p1, initial, 26847, 26852
-recovered pasa_asmbl_3020.p1, internal, 27308, 27369
-recovered pasa_asmbl_3020.p1, internal, 27653, 27791
-recovered pasa_asmbl_3020.p1, internal, 27899, 28141
-recovered pasa_asmbl_3020.p1, internal, 28270, 28367
-recovered pasa_asmbl_3020.p1, internal, 28710, 28791
-recovered pasa_asmbl_3020.p1, internal, 28941, 29058
-recovered pasa_asmbl_3020.p1, internal, 29157, 29268
-recovered pasa_asmbl_3020.p1, internal, 29393, 29498
Valid prediction for snap_scaffold_10-snap.679-T1
Valid prediction for GlimmerHMM_glimmerT_24371-T1
Valid prediction for Augustus_model.g16224.t1
Couldn't classify 109175, 109276
Couldn't classify 109826, 109910
Sorry, prediction pasa_asmbl_3824.p1 fails validation.
(ATT)	 AC	109175-109276	GT	AGG
(ATC)	 AG	109463-109590	GT	AGG
(GTT)	 AG	109826-109910	AC	GGA
-recovered pasa_asmbl_3824.p1, internal, 109463, 109590
Valid prediction for snap_scaffold_10-snap.652-T1
Couldn't classify 79862, 79863
Sorry, prediction pasa_asmbl_3027.p1 fails validation.
(ATG)	 CC	79862-79863	GT	ATG
(GGT)	 AG	80720-80806	GT	AAG
(GAT)	 AG	80959-81103	GT	ATG
(GAC)	 AG	82101-82213	GT	AGG
(ATG)	 AG	82380-82472	GT	AGG
(GTT)	 AG	82636-83098	TT	GAT
add_exon() Sorry, pasa_asmbl_3027.p1 82380-82472-initial-1 is invalid.
-recovered pasa_asmbl_3027.p1, initial, 82380, 82472
-recovered pasa_asmbl_3027.p1, terminal, 82101, 82213
-recovered pasa_asmbl_3027.p1, terminal, 82636, 83098
-recovered pasa_asmbl_3027.p1, internal, 80720, 80806
-recovered pasa_asmbl_3027.p1, internal, 80959, 81103
-recovered pasa_asmbl_3027.p1, internal, 82101, 82213
-recovered pasa_asmbl_3027.p1, internal, 82380, 82472
Couldn't classify 23999, 24607
Couldn't classify 26294, 26428
Sorry, prediction pasa_asmbl_3019.p1 fails validation.
(CCC)	 CT	23999-24607	GT	CGG
(GAC)	 AG	24742-24890	GT	AGG
(ACA)	 AG	25368-25459	GT	AGG
(ATC)	 AG	25546-25759	GT	AGG
(GAG)	 AG	25905-26094	GT	AGG
(AGC)	 AG	26294-26428	TA	CCT
-recovered pasa_asmbl_3019.p1, internal, 24742, 24890
-recovered pasa_asmbl_3019.p1, internal, 25368, 25459
-recovered pasa_asmbl_3019.p1, internal, 25546, 25759
-recovered pasa_asmbl_3019.p1, internal, 25905, 26094
Couldn't classify 29816, 29845
Couldn't classify 30925, 30971
Sorry, prediction pasa_asmbl_3021.p1 fails validation.
(TCC)	 AC	29816-29845	GT	AGG
(ATG)	 AG	30321-30434	GT	GGG
(ACG)	 AG	30609-30810	GT	AGG
(CTC)	 AG	30925-30971	CC	CCC
-recovered pasa_asmbl_3021.p1, initial, 30321, 30434
-recovered pasa_asmbl_3021.p1, internal, 30321, 30434
-recovered pasa_asmbl_3021.p1, internal, 30609, 30810
Valid prediction for pasa_asmbl_3029.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 30617, 30733
Sorry, prediction pasa_asmbl_4174.p1 fails validation.
(GGG)	 CG	30617-30733	GT	AGG
(GTC)	 AG	30867-31041	GT	TGG
(CCG)	 AG	31214-31349	GT	AGG
(CTT)	 AG	31488-31622	GT	GAG
(GGA)	 AG	31726-31849	GT	CGG
(GAT)	 AG	32102-32167	GT	AGG
(GAA)	 AG	32257-32328	GT	CTG
(AAT)	 AG	32428-32475	GT	TGG
(GCT)	 AG	32631-32702	AA	AAA
-recovered pasa_asmbl_4174.p1, terminal, 32631, 32702
-recovered pasa_asmbl_4174.p1, internal, 30867, 31041
-recovered pasa_asmbl_4174.p1, internal, 31214, 31349
-recovered pasa_asmbl_4174.p1, internal, 31488, 31622
-recovered pasa_asmbl_4174.p1, internal, 31726, 31849
-recovered pasa_asmbl_4174.p1, internal, 32102, 32167
-recovered pasa_asmbl_4174.p1, internal, 32257, 32328
-recovered pasa_asmbl_4174.p1, internal, 32428, 32475
Valid prediction for snap_scaffold_10-snap.662-T1
Valid prediction for snap_scaffold_10-snap.671-T1
Couldn't classify 42660, 42772
Sorry, prediction pasa_asmbl_4171.p2 fails validation.
(GGC)	 CA	42660-42772	GT	AGG
(ATG)	 AG	42940-43129	AC	GAA
-recovered pasa_asmbl_4171.p2, terminal, 42940, 43129
Valid prediction for CodingQuarry_transcript_5320-T1
Valid prediction for Augustus_model.g16221.t1
Couldn't classify 127392, 127515
Sorry, prediction pasa_asmbl_4150.p1 fails validation.
(GGC)	 CC	127392-127515	GT	CGG
(GGG)	 AG	127807-128093	GT	AGG
(ATA)	 AG	128195-128342	GT	AGG
(GTG)	 AG	128899-129260	CA	GAC
-recovered pasa_asmbl_4150.p1, terminal, 128899, 129260
-recovered pasa_asmbl_4150.p1, internal, 127807, 128093
-recovered pasa_asmbl_4150.p1, internal, 128195, 128342
Valid prediction for GlimmerHMM_glimmerT_24380-T1
Valid prediction for GlimmerHMM_glimmerT_24369-T1
Valid prediction for snap_scaffold_10-snap.663-T1
Valid prediction for snap_scaffold_10-snap.649-T1
Valid prediction for GlimmerHMM_glimmerT_24381-T1
Valid prediction for Augustus_model.g16239.t1
Valid prediction for GlimmerHMM_glimmerT_24361-T1
Valid prediction for GlimmerHMM_glimmerT_24351-T1
Couldn't classify 35223, 35585
Sorry, prediction pasa_asmbl_4172.p1 fails validation.
(GCG)	 AT	35223-35585	GG	CAG
Valid prediction for Augustus_model.g16226.t1
Valid prediction for snap_scaffold_10-snap.654-T1
Valid prediction for pasa_asmbl_4148.p1
Valid prediction for snap_scaffold_10-snap.659-T1
Valid prediction for CodingQuarry_transcript_5321-T1
Valid prediction for snap_scaffold_10-snap.676-T1
Valid prediction for snap_scaffold_10-snap.660-T1
Valid prediction for GlimmerHMM_glimmerT_24350-T1
Valid prediction for HiQ_model.g16228.t1
Valid prediction for snap_scaffold_10-snap.669-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_24382-T1
Valid prediction for snap_scaffold_10-snap.682-T1
Valid prediction for Augustus_model.g16238.t1
Valid prediction for snap_scaffold_10-snap.645-T1
Couldn't classify 115030, 115135
Sorry, prediction pasa_asmbl_4154.p1 fails validation.
(GTA)	 CT	115030-115135	GT	TGG
(GGT)	 AG	115413-115542	GT	ATG
(AGT)	 AG	115805-115882	GT	ATG
(CCA)	 AG	116290-116383	TT	GAT
-recovered pasa_asmbl_4154.p1, terminal, 116290, 116383
-recovered pasa_asmbl_4154.p1, internal, 115413, 115542
-recovered pasa_asmbl_4154.p1, internal, 115805, 115882
Valid prediction for GlimmerHMM_glimmerT_24358-T1
Valid prediction for GlimmerHMM_glimmerT_24376-T1
Valid prediction for snap_scaffold_10-snap.647-T1
Valid prediction for snap_scaffold_10-snap.674-T1
Valid prediction for snap_scaffold_10-snap.672-T1
Valid prediction for snap_scaffold_10-snap.655-T1
Valid prediction for HiQ_model.g16241.t1
Valid prediction for GlimmerHMM_glimmerT_24383-T1
Valid prediction for snap_scaffold_10-snap.658-T1
Valid prediction for GlimmerHMM_glimmerT_24362-T1
Valid prediction for snap_scaffold_10-snap.681-T1
Valid prediction for HiQ_model.g16225.t1
Valid prediction for CodingQuarry_transcript_5323-T1
Valid prediction for GlimmerHMM_glimmerT_24375-T1
Valid prediction for GlimmerHMM_glimmerT_24355-T1
Valid prediction for Augustus_model.g16222.t1
Valid prediction for snap_scaffold_10-snap.665-T1
Couldn't classify 3363, 3508
Sorry, prediction pasa_asmbl_4176.p1 fails validation.
(TGG)	 AT	3363-3508	GT	AGG
(AGC)	 AG	3919-4112	GT	AAG
(AGC)	 AG	4430-4619	GT	CGG
(GGC)	 AG	4753-4881	GT	TGG
(CCC)	 AG	5071-5200	GT	AGG
(GTG)	 AG	5360-5431	GT	GGG
(TTG)	 AG	5717-5864	GT	TGG
(GTC)	 AG	7260-7394	GT	TGG
(CTT)	 AG	7489-7538	GT	TGG
(TGG)	 AG	7687-7944	AC	AGA
-recovered pasa_asmbl_4176.p1, terminal, 7687, 7944
-recovered pasa_asmbl_4176.p1, internal, 3919, 4112
-recovered pasa_asmbl_4176.p1, internal, 4430, 4619
-recovered pasa_asmbl_4176.p1, internal, 4753, 4881
-recovered pasa_asmbl_4176.p1, internal, 5071, 5200
-recovered pasa_asmbl_4176.p1, internal, 5360, 5431
-recovered pasa_asmbl_4176.p1, internal, 5717, 5864
-recovered pasa_asmbl_4176.p1, internal, 7260, 7394
-recovered pasa_asmbl_4176.p1, internal, 7489, 7538
Valid prediction for snap_scaffold_10-snap.653-T1
Valid prediction for pasa_asmbl_4147.p1
Valid prediction for Augustus_model.g16232.t1
Couldn't classify 58337, 58347
Couldn't classify 60236, 60340
Sorry, prediction pasa_asmbl_4162.p1 fails validation.
(CCA)	 TC	58337-58347	GT	AGG
(CAG)	 AG	58575-58706	GT	TGG
(GGA)	 AG	59028-59154	GT	TGG
(GTT)	 AG	59538-59642	GT	AGG
(GAA)	 AG	59919-60014	GT	AGG
(AGG)	 AG	60236-60340	TA	GGT
-recovered pasa_asmbl_4162.p1, internal, 58575, 58706
-recovered pasa_asmbl_4162.p1, internal, 59028, 59154
-recovered pasa_asmbl_4162.p1, internal, 59538, 59642
-recovered pasa_asmbl_4162.p1, internal, 59919, 60014
Valid prediction for snap_scaffold_10-snap.677-T1
Valid prediction for GlimmerHMM_glimmerT_24348-T1
Valid prediction for Augustus_model.g16227.t1
Valid prediction for CodingQuarry_transcript_5316-T1
Valid prediction for snap_scaffold_10-snap.667-T1
Valid prediction for CodingQuarry_transcript_5318-T1
Valid prediction for GlimmerHMM_glimmerT_24359-T1
Valid prediction for Augustus_model.g16234.t1
Valid prediction for GlimmerHMM_glimmerT_24370-T1
Valid prediction for snap_scaffold_10-snap.651-T1
Valid prediction for GlimmerHMM_glimmerT_24372-T1
Valid prediction for HiQ_model.g16229.t1
Valid prediction for Augustus_model.g16240.t1
Valid prediction for HiQ_model.g16235.t1
Valid prediction for HiQ_model.g16233.t1
Couldn't classify 112280, 112303
Sorry, prediction pasa_asmbl_4157.p2 fails validation.
(TCA)	 TT	112280-112303	GT	TGG
(ACG)	 AG	113064-113199	GT	GTG
(ACA)	 AG	113478-113562	GT	AGG
(GAA)	 AG	114094-114163	AT	AGA
-recovered pasa_asmbl_4157.p2, terminal, 114094, 114163
-recovered pasa_asmbl_4157.p2, internal, 113064, 113199
-recovered pasa_asmbl_4157.p2, internal, 113478, 113562
Valid prediction for GlimmerHMM_glimmerT_24374-T1
Valid prediction for snap_scaffold_10-snap.664-T1
Valid prediction for GlimmerHMM_glimmerT_24368-T1
Couldn't classify 34749, 35168
Sorry, prediction pasa_asmbl_4173.p1 fails validation.
(ATG)	 GC	34749-35168	GA	GGG
Couldn't classify 121759, 121807
Couldn't classify 126117, 126253
Sorry, prediction pasa_asmbl_4151.p1 fails validation.
(CGA)	 TG	121759-121807	GT	AGG
(TCA)	 AG	123476-123592	GT	TCG
(CTG)	 AG	125245-125385	GT	AGG
(CCA)	 AG	125681-125824	GT	AGG
(GTA)	 AG	126117-126253	TA	CGT
-recovered pasa_asmbl_4151.p1, internal, 123476, 123592
-recovered pasa_asmbl_4151.p1, internal, 125245, 125385
-recovered pasa_asmbl_4151.p1, internal, 125681, 125824
Valid prediction for snap_scaffold_10-snap.684-T1
Valid prediction for CodingQuarry_transcript_5319-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7757, rend_intergenic: 2988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9947, rend_intergenic: 7791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13002, rend_intergenic: 10138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18539, rend_intergenic: 13823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26876, rend_intergenic: 25879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32853, rend_intergenic: 27188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36593, rend_intergenic: 32981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49483, rend_intergenic: 48140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57766, rend_intergenic: 55767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95367, rend_intergenic: 89038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99522, rend_intergenic: 98829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104892, rend_intergenic: 100044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115938, rend_intergenic: 106096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127652, rend_intergenic: 122962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144534, rend_intergenic: 138933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176378, rend_intergenic: 172057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 163127, rend_intergenic: 163124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 182061
-exon list size: 502


building trellis

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33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.9    
40.1    
40.3    
40.5    
40.7    
40.9    
41.1    
41.3    
41.5    
41.7    
41.9    
42.1    
42.3    
42.5    
42.7    
42.9    
43.1    
43.3    
43.5    
43.7    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
48.0    
48.2    
48.4    
48.6    
48.8    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.2    
51.4    
51.6    
51.8    
52.0    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.3    
56.5    
56.7    
56.9    
57.1    
57.3    
57.5    
57.7    
57.9    
58.1    
58.3    
58.5    
58.7    
58.9    
59.1    
59.3    
59.5    
59.7    
59.9    
60.1    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.1    
64.3    
64.5    
64.7    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.1    
67.3    
67.5    
67.7    
67.9    
68.1    
68.3    
68.5    
68.7    
68.8    
69.0    
69.2    
69.4    
69.6    
69.8    
70.0    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.4    
71.6    
71.8    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.8    
74.0    
74.2    
74.4    
74.6    
74.8    
75.0    
75.2    
75.4    
75.6    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.6    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.2    
80.4    
80.6    
80.8    
81.0    
81.2    
81.3    
81.5    
81.7    
81.9    
82.1    
82.3    
82.5    
82.7    
82.9    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.7    
87.9    
88.1    
88.3    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.3    
90.5    
90.7    
90.9    
91.1    
91.3    
91.5    
91.7    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 7757, rend_intergenic: 2988  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9947, rend_intergenic: 7791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13002, rend_intergenic: 10138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18539, rend_intergenic: 13823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26876, rend_intergenic: 25879  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32853, rend_intergenic: 27188  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36593, rend_intergenic: 32981  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49483, rend_intergenic: 48140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57766, rend_intergenic: 55767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95367, rend_intergenic: 89038  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99522, rend_intergenic: 98829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104892, rend_intergenic: 100044  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115938, rend_intergenic: 106096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127652, rend_intergenic: 122962  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144534, rend_intergenic: 138933  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176378, rend_intergenic: 172057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 163127, rend_intergenic: 163124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support