-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_2367145-2633999

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g16156.t1
Valid prediction for Augustus_model.g16171.t1
Valid prediction for HiQ_model.g16162.t1
Valid prediction for snap_scaffold_10-snap.510-T1
Valid prediction for snap_scaffold_10-snap.519-T1
Valid prediction for snap_scaffold_10-snap.505-T1
Valid prediction for GlimmerHMM_glimmerT_24271-T1
Valid prediction for snap_scaffold_10-snap.517-T1
Valid prediction for GlimmerHMM_glimmerT_24279-T1
Valid prediction for Augustus_model.g16170.t1
Valid prediction for GlimmerHMM_glimmerT_24262-T1
Valid prediction for GlimmerHMM_glimmerT_24256-T1
Valid prediction for snap_scaffold_10-snap.555-T1
Valid prediction for snap_scaffold_10-snap.550-T1
Valid prediction for GlimmerHMM_glimmerT_24280-T1
Valid prediction for snap_scaffold_10-snap.552-T1
Couldn't classify 111037, 111453
Sorry, prediction pasa_asmbl_2974.p2 fails validation.
(GAG)	 AC	111037-111453	GG	ATG
Valid prediction for snap_scaffold_10-snap.512-T1
Valid prediction for snap_scaffold_10-snap.545-T1
Valid prediction for Augustus_model.g16169.t1
Valid prediction for snap_scaffold_10-snap.504-T1
Valid prediction for Augustus_model.g16173.t1
Valid prediction for snap_scaffold_10-snap.547-T1
Valid prediction for snap_scaffold_10-snap.509-T1
Valid prediction for GlimmerHMM_glimmerT_24261-T1
Valid prediction for snap_scaffold_10-snap.537-T1
Valid prediction for GlimmerHMM_glimmerT_24269-T1
Valid prediction for snap_scaffold_10-snap.551-T1
Couldn't classify 190611, 191030
Sorry, prediction pasa_asmbl_2979.p3 fails validation.
(CAG)	 GC	190611-191030	AA	AGA
Valid prediction for snap_scaffold_10-snap.549-T1
Valid prediction for GlimmerHMM_glimmerT_24277-T1
Valid prediction for snap_scaffold_10-snap.532-T1
Valid prediction for GlimmerHMM_glimmerT_24255-T1
Valid prediction for snap_scaffold_10-snap.515-T1
Valid prediction for snap_scaffold_10-snap.523-T1
Valid prediction for GlimmerHMM_glimmerT_24286-T1
Couldn't classify 97317, 97871
Sorry, prediction pasa_asmbl_2972.p1 fails validation.
(ATG)	 GC	95184-95249	GT	AGG
(GTC)	 AG	96288-96386	GT	AGG
(GAC)	 AG	97317-97871	GT	AGG
-recovered pasa_asmbl_2972.p1, initial, 95184, 95249
-recovered pasa_asmbl_2972.p1, internal, 96288, 96386
-recovered pasa_asmbl_2972.p1, internal, 97317, 97871
Valid prediction for snap_scaffold_10-snap.534-T1
Valid prediction for Augustus_model.g16166.t1
Valid prediction for Augustus_model.g16158.t1
Couldn't classify 111517, 111810
Sorry, prediction pasa_asmbl_2975.p1 fails validation.
(GAG)	 GG	111517-111810	GT	AGG
(GCC)	 AG	113607-113741	GT	AGG
(TAC)	 AG	116510-116712	GT	AGG
(GTT)	 AG	117569-117656	GT	AGG
(GAG)	 AG	119037-119207	AG	AGA
-recovered pasa_asmbl_2975.p1, terminal, 119037, 119207
-recovered pasa_asmbl_2975.p1, internal, 113607, 113741
-recovered pasa_asmbl_2975.p1, internal, 116510, 116712
-recovered pasa_asmbl_2975.p1, internal, 117569, 117656
Valid prediction for snap_scaffold_10-snap.524-T1
Valid prediction for Augustus_model.g16172.t1
Valid prediction for pasa_asmbl_2978.p1
Valid prediction for Augustus_model.g16160.t1
Valid prediction for GlimmerHMM_glimmerT_24284-T1
Valid prediction for GlimmerHMM_glimmerT_24283-T1
Valid prediction for Augustus_model.g16163.t1
Valid prediction for snap_scaffold_10-snap.503-T1
Valid prediction for GlimmerHMM_glimmerT_24260-T1
Valid prediction for GlimmerHMM_glimmerT_24264-T1
Valid prediction for GlimmerHMM_glimmerT_24276-T1
Valid prediction for snap_scaffold_10-snap.530-T1
Valid prediction for GlimmerHMM_glimmerT_24254-T1
Valid prediction for snap_scaffold_10-snap.539-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.522-T1
Valid prediction for snap_scaffold_10-snap.546-T1
Valid prediction for GlimmerHMM_glimmerT_24267-T1
Valid prediction for GlimmerHMM_glimmerT_24274-T1
Valid prediction for snap_scaffold_10-snap.543-T1
Valid prediction for Augustus_model.g16165.t1
Valid prediction for snap_scaffold_10-snap.518-T1
Valid prediction for snap_scaffold_10-snap.544-T1
Valid prediction for snap_scaffold_10-snap.506-T1
Valid prediction for snap_scaffold_10-snap.526-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g16161.t1
Valid prediction for GlimmerHMM_glimmerT_24285-T1
Valid prediction for snap_scaffold_10-snap.528-T1
Valid prediction for GlimmerHMM_glimmerT_24273-T1
Valid prediction for GlimmerHMM_glimmerT_24266-T1
Valid prediction for snap_scaffold_10-snap.541-T1
Valid prediction for GlimmerHMM_glimmerT_24272-T1
Valid prediction for snap_scaffold_10-snap.513-T1
Valid prediction for snap_scaffold_10-snap.525-T1
Valid prediction for snap_scaffold_10-snap.535-T1
Valid prediction for snap_scaffold_10-snap.521-T1
Valid prediction for snap_scaffold_10-snap.520-T1
Valid prediction for GlimmerHMM_glimmerT_24282-T1
Valid prediction for snap_scaffold_10-snap.548-T1
Valid prediction for snap_scaffold_10-snap.514-T1
Valid prediction for GlimmerHMM_glimmerT_24281-T1
Valid prediction for GlimmerHMM_glimmerT_24278-T1
Valid prediction for GlimmerHMM_glimmerT_24263-T1
Valid prediction for GlimmerHMM_glimmerT_24265-T1
Valid prediction for GlimmerHMM_glimmerT_24259-T1
Valid prediction for Augustus_model.g16157.t1
Valid prediction for snap_scaffold_10-snap.557-T1
Valid prediction for Augustus_model.g16159.t1
Valid prediction for GlimmerHMM_glimmerT_24258-T1
Valid prediction for Augustus_model.g16168.t1
Couldn't classify 132258, 132345
Sorry, prediction pasa_asmbl_4105.p1 fails validation.
(AGT)	 AC	132258-132345	GT	AGG
(GTA)	 AG	133916-134139	CT	AAC
-recovered pasa_asmbl_4105.p1, terminal, 133916, 134139
Valid prediction for GlimmerHMM_glimmerT_24268-T1
Valid prediction for snap_scaffold_10-snap.536-T1
Valid prediction for snap_scaffold_10-snap.533-T1
Valid prediction for Augustus_model.g16167.t1
Couldn't classify 115015, 115560
Sorry, prediction pasa_asmbl_4107.p1 fails validation.
(ATG)	 TA	115015-115560	AG	TGA
Valid prediction for snap_scaffold_10-snap.558-T1
Valid prediction for snap_scaffold_10-snap.554-T1
Valid prediction for snap_scaffold_10-snap.511-T1
Valid prediction for snap_scaffold_10-snap.527-T1
Valid prediction for snap_scaffold_10-snap.540-T1
Valid prediction for GlimmerHMM_glimmerT_24270-T1
Valid prediction for snap_scaffold_10-snap.556-T1
Valid prediction for Augustus_model.g16164.t1
Valid prediction for snap_scaffold_10-snap.542-T1
Valid prediction for GlimmerHMM_glimmerT_24275-T1
Valid prediction for snap_scaffold_10-snap.507-T1
Valid prediction for GlimmerHMM_glimmerT_24257-T1
Valid prediction for snap_scaffold_10-snap.538-T1
Valid prediction for snap_scaffold_10-snap.516-T1
Valid prediction for GlimmerHMM_glimmerT_24252-T1
Valid prediction for snap_scaffold_10-snap.508-T1
Valid prediction for snap_scaffold_10-snap.553-T1
Valid prediction for GlimmerHMM_glimmerT_24253-T1
Valid prediction for snap_scaffold_10-snap.529-T1
Couldn't classify 122980, 123129
Couldn't classify 123831, 123941
Sorry, prediction pasa_asmbl_4106.p1 fails validation.
(CGG)	 AC	122980-123129	GT	AGG
(ATC)	 AG	123245-123340	GT	AGG
(GTG)	 AG	123831-123941	TG	TGT
-recovered pasa_asmbl_4106.p1, internal, 123245, 123340
Valid prediction for snap_scaffold_10-snap.531-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16259, rend_intergenic: 5906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24325, rend_intergenic: 16572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33345, rend_intergenic: 24938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46519, rend_intergenic: 39178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58111, rend_intergenic: 47168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62783, rend_intergenic: 58829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70488, rend_intergenic: 67567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82431, rend_intergenic: 71661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102100, rend_intergenic: 86109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105144, rend_intergenic: 102101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119207, rend_intergenic: 105250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138315, rend_intergenic: 132717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144422, rend_intergenic: 138427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146050, rend_intergenic: 145864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166906, rend_intergenic: 155765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171804, rend_intergenic: 169800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172193, rend_intergenic: 171893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191030, rend_intergenic: 172373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196556, rend_intergenic: 194278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199266, rend_intergenic: 198396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209529, rend_intergenic: 205699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234386, rend_intergenic: 232920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265406, rend_intergenic: 234415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 266855
-exon list size: 472


building trellis

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37.6    
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-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 16259, rend_intergenic: 5906  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24325, rend_intergenic: 16572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33345, rend_intergenic: 24938  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46519, rend_intergenic: 39178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58111, rend_intergenic: 47168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62783, rend_intergenic: 58829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70488, rend_intergenic: 67567  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82431, rend_intergenic: 71661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102100, rend_intergenic: 86109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105144, rend_intergenic: 102101  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119207, rend_intergenic: 105250  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138315, rend_intergenic: 132717  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144422, rend_intergenic: 138427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146050, rend_intergenic: 145864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166906, rend_intergenic: 155765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171804, rend_intergenic: 169800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172193, rend_intergenic: 171893  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191030, rend_intergenic: 172373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196556, rend_intergenic: 194278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199266, rend_intergenic: 198396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209529, rend_intergenic: 205699  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 234386, rend_intergenic: 232920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 265406, rend_intergenic: 234415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support