-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_2258617-2371335

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.492-T1
Valid prediction for snap_scaffold_10-snap.485-T1
Valid prediction for snap_scaffold_10-snap.501-T1
Valid prediction for snap_scaffold_10-snap.481-T1
Valid prediction for GlimmerHMM_glimmerT_24248-T1
Valid prediction for snap_scaffold_10-snap.489-T1
Valid prediction for GlimmerHMM_glimmerT_24237-T1
Valid prediction for Augustus_model.g16150.t1
Valid prediction for Augustus_model.g16151.t1
Valid prediction for snap_scaffold_10-snap.486-T1
Valid prediction for GlimmerHMM_glimmerT_24247-T1
Valid prediction for snap_scaffold_10-snap.499-T1
Valid prediction for GlimmerHMM_glimmerT_24242-T1
Valid prediction for GlimmerHMM_glimmerT_24249-T1
Valid prediction for GlimmerHMM_glimmerT_24236-T1
Valid prediction for snap_scaffold_10-snap.494-T1
Valid prediction for snap_scaffold_10-snap.503-T1
Valid prediction for GlimmerHMM_glimmerT_24239-T1
Valid prediction for snap_scaffold_10-snap.497-T1
Valid prediction for GlimmerHMM_glimmerT_24251-T1
Valid prediction for snap_scaffold_10-snap.500-T1
Valid prediction for snap_scaffold_10-snap.490-T1
Valid prediction for Augustus_model.g16155.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.482-T1
Valid prediction for GlimmerHMM_glimmerT_24244-T1
Valid prediction for GlimmerHMM_glimmerT_24240-T1
Valid prediction for snap_scaffold_10-snap.496-T1
Valid prediction for Augustus_model.g16153.t1
Valid prediction for GlimmerHMM_glimmerT_24246-T1
Valid prediction for Augustus_model.g16154.t1
Valid prediction for snap_scaffold_10-snap.480-T1
Valid prediction for GlimmerHMM_glimmerT_24238-T1
Valid prediction for GlimmerHMM_glimmerT_24250-T1
Valid prediction for Augustus_model.g16152.t1
Valid prediction for snap_scaffold_10-snap.483-T1
Valid prediction for snap_scaffold_10-snap.495-T1
Valid prediction for snap_scaffold_10-snap.493-T1
Valid prediction for GlimmerHMM_glimmerT_24243-T1
Valid prediction for GlimmerHMM_glimmerT_24245-T1
Valid prediction for snap_scaffold_10-snap.488-T1
Valid prediction for snap_scaffold_10-snap.487-T1
Valid prediction for GlimmerHMM_glimmerT_24241-T1
Valid prediction for snap_scaffold_10-snap.498-T1
Valid prediction for snap_scaffold_10-snap.484-T1
Valid prediction for snap_scaffold_10-snap.502-T1
Valid prediction for snap_scaffold_10-snap.491-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8433, rend_intergenic: 7471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19163, rend_intergenic: 12639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43304, rend_intergenic: 37124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58134, rend_intergenic: 55195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68503, rend_intergenic: 59645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74704, rend_intergenic: 72364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108169, rend_intergenic: 98728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 112719
-exon list size: 149


building trellis

0.7    
1.3    
2.0    
2.6    
3.3    
4.0    
4.6    
5.3    
6.0    
6.6    
7.3    
7.9    
8.6    
9.3    
9.9    
10.6    
11.3    
11.9    
12.6    
13.2    
13.9    
14.6    
15.2    
15.9    
16.6    
17.2    
17.9    
18.5    
19.2    
19.9    
20.5    
21.2    
21.9    
22.5    
23.2    
23.8    
24.5    
25.2    
25.8    
26.5    
27.2    
27.8    
28.5    
29.1    
29.8    
30.5    
31.1    
31.8    
32.5    
33.1    
33.8    
34.4    
35.1    
35.8    
36.4    
37.1    
37.7    
38.4    
39.1    
39.7    
40.4    
41.1    
41.7    
42.4    
43.0    
43.7    
44.4    
45.0    
45.7    
46.4    
47.0    
47.7    
48.3    
49.0    
49.7    
50.3    
51.0    
51.7    
52.3    
53.0    
53.6    
54.3    
55.0    
55.6    
56.3    
57.0    
57.6    
58.3    
58.9    
59.6    
60.3    
60.9    
61.6    
62.3    
62.9    
63.6    
64.2    
64.9    
65.6    
66.2    
66.9    
67.5    
68.2    
68.9    
69.5    
70.2    
70.9    
71.5    
72.2    
72.8    
73.5    
74.2    
74.8    
75.5    
76.2    
76.8    
77.5    
78.1    
78.8    
79.5    
80.1    
80.8    
81.5    
82.1    
82.8    
83.4    
84.1    
84.8    
85.4    
86.1    
86.8    
87.4    
88.1    
88.7    
89.4    
90.1    
90.7    
91.4    
92.1    
92.7    
93.4    
94.0    
94.7    
95.4    
96.0    
96.7    
97.4    
98.0    
98.7    
99.3    
-found 15 predictions from path traversal
Error with prediction: snap lend_intergenic: 8433, rend_intergenic: 7471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19163, rend_intergenic: 12639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43304, rend_intergenic: 37124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58134, rend_intergenic: 55195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68503, rend_intergenic: 59645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74704, rend_intergenic: 72364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108169, rend_intergenic: 98728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 26942
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 14100 - 26942
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 4 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support