-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_2117955-2263547

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.460-T1
Valid prediction for GlimmerHMM_glimmerT_24235-T1
Valid prediction for snap_scaffold_10-snap.476-T1
Valid prediction for snap_scaffold_10-snap.469-T1
Valid prediction for GlimmerHMM_glimmerT_24232-T1
Valid prediction for snap_scaffold_10-snap.465-T1
Valid prediction for snap_scaffold_10-snap.447-T1
Valid prediction for GlimmerHMM_glimmerT_24234-T1
Valid prediction for Augustus_model.g16148.t1
Valid prediction for Augustus_model.g16146.t1
Valid prediction for snap_scaffold_10-snap.451-T1
Valid prediction for snap_scaffold_10-snap.449-T1
Valid prediction for GlimmerHMM_glimmerT_24222-T1
Valid prediction for GlimmerHMM_glimmerT_24227-T1
Valid prediction for GlimmerHMM_glimmerT_24214-T1
Valid prediction for snap_scaffold_10-snap.478-T1
Valid prediction for GlimmerHMM_glimmerT_24221-T1
Valid prediction for snap_scaffold_10-snap.463-T1
Valid prediction for GlimmerHMM_glimmerT_24216-T1
Valid prediction for snap_scaffold_10-snap.459-T1
Valid prediction for snap_scaffold_10-snap.457-T1
Valid prediction for snap_scaffold_10-snap.464-T1
Valid prediction for snap_scaffold_10-snap.461-T1
Valid prediction for GlimmerHMM_glimmerT_24220-T1
Valid prediction for snap_scaffold_10-snap.471-T1
Valid prediction for snap_scaffold_10-snap.473-T1
Valid prediction for Augustus_model.g16147.t1
Valid prediction for snap_scaffold_10-snap.474-T1
Valid prediction for snap_scaffold_10-snap.455-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_24229-T1
Valid prediction for GlimmerHMM_glimmerT_24231-T1
Valid prediction for snap_scaffold_10-snap.472-T1
Valid prediction for snap_scaffold_10-snap.462-T1
Valid prediction for Augustus_model.g16140.t1
Valid prediction for GlimmerHMM_glimmerT_24228-T1
Valid prediction for GlimmerHMM_glimmerT_24233-T1
Valid prediction for snap_scaffold_10-snap.448-T1
Valid prediction for Augustus_model.g16145.t1
Valid prediction for GlimmerHMM_glimmerT_24224-T1
Valid prediction for snap_scaffold_10-snap.456-T1
Valid prediction for Augustus_model.g16149.t1
Valid prediction for snap_scaffold_10-snap.446-T1
Valid prediction for snap_scaffold_10-snap.467-T1
Valid prediction for snap_scaffold_10-snap.475-T1
Valid prediction for Augustus_model.g16139.t1
Valid prediction for GlimmerHMM_glimmerT_24225-T1
Valid prediction for GlimmerHMM_glimmerT_24218-T1
Valid prediction for GlimmerHMM_glimmerT_24215-T1
Valid prediction for snap_scaffold_10-snap.452-T1
Valid prediction for snap_scaffold_10-snap.468-T1
Valid prediction for Augustus_model.g16137.t1
Valid prediction for GlimmerHMM_glimmerT_24230-T1
Valid prediction for GlimmerHMM_glimmerT_24217-T1
Valid prediction for Augustus_model.g16141.t1
Valid prediction for snap_scaffold_10-snap.454-T1
Valid prediction for GlimmerHMM_glimmerT_24226-T1
Valid prediction for snap_scaffold_10-snap.450-T1
Valid prediction for GlimmerHMM_glimmerT_24219-T1
Valid prediction for Augustus_model.g16143.t1
Valid prediction for Augustus_model.g16144.t1
Valid prediction for snap_scaffold_10-snap.470-T1
Valid prediction for snap_scaffold_10-snap.477-T1
Valid prediction for Augustus_model.g16142.t1
Valid prediction for GlimmerHMM_glimmerT_24223-T1
Valid prediction for snap_scaffold_10-snap.453-T1
Valid prediction for snap_scaffold_10-snap.466-T1
Valid prediction for Augustus_model.g16138.t1
Valid prediction for snap_scaffold_10-snap.479-T1
Valid prediction for snap_scaffold_10-snap.458-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12793, rend_intergenic: 9353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27447, rend_intergenic: 21697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53175, rend_intergenic: 48696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88942, rend_intergenic: 84457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91165, rend_intergenic: 89430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102121, rend_intergenic: 94132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108881, rend_intergenic: 104294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119325, rend_intergenic: 110143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128452, rend_intergenic: 127343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133611, rend_intergenic: 128773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140929, rend_intergenic: 135861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 145593
-exon list size: 221


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.7    
3.1    
3.6    
4.0    
4.5    
4.9    
5.4    
5.8    
6.3    
6.7    
7.2    
7.6    
8.1    
8.5    
9.0    
9.4    
9.9    
10.3    
10.8    
11.2    
11.7    
12.1    
12.6    
13.0    
13.5    
13.9    
14.3    
14.8    
15.2    
15.7    
16.1    
16.6    
17.0    
17.5    
17.9    
18.4    
18.8    
19.3    
19.7    
20.2    
20.6    
21.1    
21.5    
22.0    
22.4    
22.9    
23.3    
23.8    
24.2    
24.7    
25.1    
25.6    
26.0    
26.5    
26.9    
27.4    
27.8    
28.3    
28.7    
29.1    
29.6    
30.0    
30.5    
30.9    
31.4    
31.8    
32.3    
32.7    
33.2    
33.6    
34.1    
34.5    
35.0    
35.4    
35.9    
36.3    
36.8    
37.2    
37.7    
38.1    
38.6    
39.0    
39.5    
39.9    
40.4    
40.8    
41.3    
41.7    
42.2    
42.6    
43.0    
43.5    
43.9    
44.4    
44.8    
45.3    
45.7    
46.2    
46.6    
47.1    
47.5    
48.0    
48.4    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.6    
52.0    
52.5    
52.9    
53.4    
53.8    
54.3    
54.7    
55.2    
55.6    
56.1    
56.5    
57.0    
57.4    
57.8    
58.3    
58.7    
59.2    
59.6    
60.1    
60.5    
61.0    
61.4    
61.9    
62.3    
62.8    
63.2    
63.7    
64.1    
64.6    
65.0    
65.5    
65.9    
66.4    
66.8    
67.3    
67.7    
68.2    
68.6    
69.1    
69.5    
70.0    
70.4    
70.9    
71.3    
71.7    
72.2    
72.6    
73.1    
73.5    
74.0    
74.4    
74.9    
75.3    
75.8    
76.2    
76.7    
77.1    
77.6    
78.0    
78.5    
78.9    
79.4    
79.8    
80.3    
80.7    
81.2    
81.6    
82.1    
82.5    
83.0    
83.4    
83.9    
84.3    
84.8    
85.2    
85.7    
86.1    
86.5    
87.0    
87.4    
87.9    
88.3    
88.8    
89.2    
89.7    
90.1    
90.6    
91.0    
91.5    
91.9    
92.4    
92.8    
93.3    
93.7    
94.2    
94.6    
95.1    
95.5    
96.0    
96.4    
96.9    
97.3    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 12793, rend_intergenic: 9353  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27447, rend_intergenic: 21697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53175, rend_intergenic: 48696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88942, rend_intergenic: 84457  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91165, rend_intergenic: 89430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102121, rend_intergenic: 94132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108881, rend_intergenic: 104294  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119325, rend_intergenic: 110143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128452, rend_intergenic: 127343  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133611, rend_intergenic: 128773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140929, rend_intergenic: 135861  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support