-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_17720934-17789119

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_26288-T1
Valid prediction for snap_scaffold_10-snap.3590-T1
Valid prediction for GlimmerHMM_glimmerT_26290-T1
Valid prediction for snap_scaffold_10-snap.3593-T1
Valid prediction for GlimmerHMM_glimmerT_26293-T1
Valid prediction for GlimmerHMM_glimmerT_26294-T1
Couldn't classify 63703, 63798
Sorry, prediction snap_scaffold_10-snap.3596-T1 fails validation.
(ATG)	 TG	58606-58668	GT	AGG
(GGA)	 AG	60765-61733	GT	GGG
(TGC)	 AG	63703-63798	GT	AGG
-recovered snap_scaffold_10-snap.3596-T1, initial, 58606, 58668
-recovered snap_scaffold_10-snap.3596-T1, internal, 60765, 61733
-recovered snap_scaffold_10-snap.3596-T1, internal, 63703, 63798

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.3592-T1
Valid prediction for GlimmerHMM_glimmerT_26295-T1
Valid prediction for snap_scaffold_10-snap.3597-T1
add_exon() Sorry, snap_scaffold_10-snap.3597-T1 921-1296-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_26292-T1
Valid prediction for GlimmerHMM_glimmerT_26289-T1
Valid prediction for snap_scaffold_10-snap.3595-T1
Valid prediction for GlimmerHMM_glimmerT_26291-T1
Valid prediction for snap_scaffold_10-snap.3591-T1
Valid prediction for GlimmerHMM_glimmerT_26287-T1
Valid prediction for snap_scaffold_10-snap.3594-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20191, rend_intergenic: 17463  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33712, rend_intergenic: 24552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55511, rend_intergenic: 36207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 68186
-exon list size: 59


building trellis

1.6    
3.3    
4.9    
6.6    
8.2    
9.8    
11.5    
13.1    
14.8    
16.4    
18.0    
19.7    
21.3    
23.0    
24.6    
26.2    
27.9    
29.5    
31.1    
32.8    
34.4    
36.1    
37.7    
39.3    
41.0    
42.6    
44.3    
45.9    
47.5    
49.2    
50.8    
52.5    
54.1    
55.7    
57.4    
59.0    
60.7    
62.3    
63.9    
65.6    
67.2    
68.9    
70.5    
72.1    
73.8    
75.4    
77.0    
78.7    
80.3    
82.0    
83.6    
85.2    
86.9    
88.5    
90.2    
91.8    
93.4    
95.1    
96.7    
98.4    
-found 8 predictions from path traversal
Error with prediction: snap lend_intergenic: 20191, rend_intergenic: 17463  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33712, rend_intergenic: 24552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55511, rend_intergenic: 36207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support