-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_17299752-17545851

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.3549-T1
Valid prediction for snap_scaffold_10-snap.3524-T1
Valid prediction for pasa_asmbl_3763.p1
Valid prediction for snap_scaffold_10-snap.3537-T1
Valid prediction for GlimmerHMM_glimmerT_26255-T1
Valid prediction for Augustus_model.g17440.t1
Valid prediction for GlimmerHMM_glimmerT_26231-T1
Couldn't classify 46803, 47201
Sorry, prediction pasa_asmbl_5054.p1 fails validation.
(ATG)	 AT	46803-47201	GG	CAG
Valid prediction for snap_scaffold_10-snap.3527-T1
Valid prediction for GlimmerHMM_glimmerT_26254-T1
Valid prediction for GlimmerHMM_glimmerT_26249-T1
Valid prediction for CodingQuarry_transcript_5693-T1
Valid prediction for pasa_asmbl_3766.p1
Valid prediction for snap_scaffold_10-snap.3507-T1
Valid prediction for Augustus_model.g17444.t1
Valid prediction for HiQ_model.g17433.t1
Valid prediction for snap_scaffold_10-snap.3531-T1
Valid prediction for Augustus_model.g17443.t1
Valid prediction for snap_scaffold_10-snap.3533-T1
Couldn't classify 91709, 92650
Sorry, prediction pasa_asmbl_3801.p1 fails validation.
(CAT)	 GC	91709-92650	GG	CTG
Valid prediction for Augustus_model.g17442.t1
Valid prediction for snap_scaffold_10-snap.3515-T1
Valid prediction for GlimmerHMM_glimmerT_26258-T1
Valid prediction for snap_scaffold_10-snap.3544-T1
Valid prediction for snap_scaffold_10-snap.3534-T1
Valid prediction for HiQ_model.g17430.t1
Valid prediction for GlimmerHMM_glimmerT_26248-T1
Couldn't classify 89024, 89193
Couldn't classify 90442, 90907
Sorry, prediction pasa_asmbl_3770.p1 fails validation.
(CAT)	 CT	89024-89193	GT	AGG
(GGC)	 AG	89279-89403	GT	AGG
(CCA)	 AG	89763-89851	GT	AGG
(GCT)	 AG	89951-90027	GT	AGG
(ACG)	 AG	90183-90308	GT	CTG
(GTC)	 AG	90442-90907	AC	ACA
-recovered pasa_asmbl_3770.p1, internal, 89279, 89403
-recovered pasa_asmbl_3770.p1, internal, 89763, 89851
-recovered pasa_asmbl_3770.p1, internal, 89951, 90027
-recovered pasa_asmbl_3770.p1, internal, 90183, 90308
Valid prediction for GlimmerHMM_glimmerT_26253-T1
Valid prediction for GlimmerHMM_glimmerT_26235-T1
Valid prediction for Augustus_model.g17441.t1
Valid prediction for Augustus_model.g17437.t1
Couldn't classify 93725, 93848
Couldn't classify 96191, 96234
Sorry, prediction pasa_asmbl_3773.p1 fails validation.
(GAG)	 AG	93725-93848	GT	AGG
(AAG)	 AG	94306-94391	GT	AGG
(GAG)	 AG	95433-95478	GT	AAG
(GCT)	 AG	96191-96234	AA	CCA
-recovered pasa_asmbl_3773.p1, internal, 93725, 93848
-recovered pasa_asmbl_3773.p1, internal, 94306, 94391
-recovered pasa_asmbl_3773.p1, internal, 95433, 95478
Couldn't classify 159304, 159413
Sorry, prediction pasa_asmbl_3776.p1 fails validation.
(ATG)	 TC	157542-158223	GT	AGG
(ACC)	 AG	159304-159413	GC	ATG
-recovered pasa_asmbl_3776.p1, initial, 157542, 158223
-recovered pasa_asmbl_3776.p1, internal, 159304, 159413
Valid prediction for GlimmerHMM_glimmerT_26244-T1
Valid prediction for GlimmerHMM_glimmerT_26262-T1
Couldn't classify 45898, 46194
Sorry, prediction pasa_asmbl_5184.p1 fails validation.
(ATG)	 TC	45898-46194	AC	GTA
Valid prediction for snap_scaffold_10-snap.3513-T1
Valid prediction for snap_scaffold_10-snap.3529-T1
Couldn't classify 195343, 195471
Couldn't classify 198145, 198305
Sorry, prediction pasa_asmbl_3896.p1 fails validation.
(GCA)	 AG	195343-195471	GT	AGG
(GTG)	 AG	195645-195810	GT	CGG
(AAG)	 AG	198145-198305	GA	AAG
-recovered pasa_asmbl_3896.p1, internal, 195343, 195471
-recovered pasa_asmbl_3896.p1, internal, 195645, 195810
Valid prediction for snap_scaffold_10-snap.3520-T1
Couldn't classify 90995, 91462
Sorry, prediction pasa_asmbl_3771.p1 fails validation.
(GTG)	 GT	90995-91462	GG	CAG
Valid prediction for snap_scaffold_10-snap.3548-T1
Valid prediction for snap_scaffold_10-snap.3546-T1
Valid prediction for GlimmerHMM_glimmerT_26246-T1
Valid prediction for Augustus_model.g17438.t1
Valid prediction for snap_scaffold_10-snap.3510-T1
Valid prediction for GlimmerHMM_glimmerT_26260-T1
Valid prediction for CodingQuarry_transcript_5691-T1
Valid prediction for GlimmerHMM_glimmerT_26257-T1
Valid prediction for snap_scaffold_10-snap.3525-T1
Valid prediction for snap_scaffold_10-snap.3517-T1
Valid prediction for snap_scaffold_10-snap.3542-T1
Valid prediction for GlimmerHMM_glimmerT_26263-T1
Valid prediction for snap_scaffold_10-snap.3540-T1
Couldn't classify 202774, 202957
Couldn't classify 203729, 203899
Sorry, prediction pasa_asmbl_3779.p1 fails validation.
(CTC)	 CC	202774-202957	GT	AGG
(ATT)	 AG	203226-203320	GT	TTG
(ATG)	 AG	203729-203899	AA	GGA
-recovered pasa_asmbl_3779.p1, internal, 203226, 203320
Valid prediction for GlimmerHMM_glimmerT_26250-T1
Valid prediction for Augustus_model.g17436.t1
Valid prediction for snap_scaffold_10-snap.3522-T1
Valid prediction for snap_scaffold_10-snap.3539-T1
Couldn't classify 161209, 161310
Couldn't classify 163613, 164366
Sorry, prediction pasa_asmbl_3777.p1 fails validation.
(GTG)	 AG	161209-161310	GT	TGG
(GTG)	 AG	162037-162195	GT	AGG
(GAC)	 AG	162684-162871	GT	GAG
(TTT)	 AG	162964-163057	GT	AGG
(AGG)	 AG	163224-163330	GT	AGG
(GTT)	 AG	163613-164366	GA	GAG
-recovered pasa_asmbl_3777.p1, internal, 161209, 161310
-recovered pasa_asmbl_3777.p1, internal, 162037, 162195
-recovered pasa_asmbl_3777.p1, internal, 162684, 162871
-recovered pasa_asmbl_3777.p1, internal, 162964, 163057
-recovered pasa_asmbl_3777.p1, internal, 163224, 163330
Valid prediction for GlimmerHMM_glimmerT_26238-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_5692-T1
Valid prediction for snap_scaffold_10-snap.3523-T1
Couldn't classify 222284, 222364
Couldn't classify 224964, 225040
Sorry, prediction pasa_asmbl_5115.p1 fails validation.
(CGC)	 CG	222284-222364	GT	TGG
(GAT)	 AG	222732-222875	GT	AGG
(AGA)	 AG	223546-223615	GT	AGG
(ATT)	 AG	224964-225040	GG	CTG
-recovered pasa_asmbl_5115.p1, internal, 222732, 222875
-recovered pasa_asmbl_5115.p1, internal, 223546, 223615
Valid prediction for snap_scaffold_10-snap.3545-T1
Valid prediction for GlimmerHMM_glimmerT_26233-T1
Valid prediction for pasa_asmbl_5056.p3
Valid prediction for GlimmerHMM_glimmerT_26256-T1
Valid prediction for HiQ_model.g17429.t1
Valid prediction for snap_scaffold_10-snap.3547-T1
Couldn't classify 171763, 171915
Sorry, prediction pasa_asmbl_5060.p1 fails validation.
(ATG)	 AG	164965-165168	GT	AGG
(GAC)	 AG	165627-165713	GT	AGG
(AAC)	 AG	165818-165915	GT	AAG
(TAA)	 AG	166600-166726	GT	AGG
(AAC)	 AG	167562-167642	GT	ATG
(TTC)	 AG	167992-168132	GT	AGG
(AGT)	 AG	169060-169175	GT	AGG
(GTT)	 AG	170125-170219	GT	AGG
(AGT)	 AG	171133-171278	GT	GGG
(TGG)	 AG	171763-171915	TG	AGT
-recovered pasa_asmbl_5060.p1, initial, 164965, 165168
-recovered pasa_asmbl_5060.p1, internal, 164965, 165168
-recovered pasa_asmbl_5060.p1, internal, 165627, 165713
-recovered pasa_asmbl_5060.p1, internal, 165818, 165915
-recovered pasa_asmbl_5060.p1, internal, 166600, 166726
-recovered pasa_asmbl_5060.p1, internal, 167562, 167642
-recovered pasa_asmbl_5060.p1, internal, 167992, 168132
-recovered pasa_asmbl_5060.p1, internal, 169060, 169175
-recovered pasa_asmbl_5060.p1, internal, 170125, 170219
-recovered pasa_asmbl_5060.p1, internal, 171133, 171278
Valid prediction for HiQ_model.g17427.t1
Valid prediction for snap_scaffold_10-snap.3511-T1
Valid prediction for GlimmerHMM_glimmerT_26243-T1
Valid prediction for Augustus_model.g17428.t1
Valid prediction for GlimmerHMM_glimmerT_26251-T1
Valid prediction for GlimmerHMM_glimmerT_26241-T1
Valid prediction for GlimmerHMM_glimmerT_26247-T1
Valid prediction for HiQ_model.g17435.t1
Valid prediction for HiQ_model.g17426.t1
Valid prediction for CodingQuarry_transcript_5690-T1
Valid prediction for CodingQuarry_transcript_5688-T1
Valid prediction for snap_scaffold_10-snap.3514-T1
Valid prediction for snap_scaffold_10-snap.3552-T1
Valid prediction for snap_scaffold_10-snap.3518-T1
Valid prediction for HiQ_model.g17434.t1
Valid prediction for Augustus_model.g17431.t1
Valid prediction for GlimmerHMM_glimmerT_26232-T1
Valid prediction for GlimmerHMM_glimmerT_26261-T1
Valid prediction for GlimmerHMM_glimmerT_26239-T1
Valid prediction for GlimmerHMM_glimmerT_26252-T1
Valid prediction for Augustus_model.g17432.t1
Valid prediction for GlimmerHMM_glimmerT_26245-T1
Valid prediction for snap_scaffold_10-snap.3509-T1
Valid prediction for snap_scaffold_10-snap.3543-T1
Valid prediction for snap_scaffold_10-snap.3526-T1
Valid prediction for snap_scaffold_10-snap.3528-T1
Valid prediction for snap_scaffold_10-snap.3516-T1
Valid prediction for CodingQuarry_transcript_5687-T1
Valid prediction for snap_scaffold_10-snap.3538-T1
Valid prediction for GlimmerHMM_glimmerT_26237-T1
Valid prediction for snap_scaffold_10-snap.3508-T1
Valid prediction for snap_scaffold_10-snap.3535-T1
Valid prediction for GlimmerHMM_glimmerT_26240-T1
Valid prediction for snap_scaffold_10-snap.3541-T1
Valid prediction for GlimmerHMM_glimmerT_26234-T1
Valid prediction for Augustus_model.g17439.t1
Valid prediction for snap_scaffold_10-snap.3536-T1
Valid prediction for snap_scaffold_10-snap.3512-T1
Valid prediction for snap_scaffold_10-snap.3550-T1
Couldn't classify 209876, 210172
Sorry, prediction pasa_asmbl_3765.p1 fails validation.
(ATG)	 TC	209876-210172	AA	AAA
Couldn't classify 218247, 218295
Sorry, prediction pasa_asmbl_5053.p1 fails validation.
(AGA)	 GC	218247-218295	GT	CGG
(TCG)	 AG	218407-218522	GT	AGG
(CTA)	 AG	218678-218773	GT	TGG
(GGT)	 AG	218950-219082	GT	AGG
(GCG)	 AG	219331-219411	GT	AGG
(CCG)	 AG	220103-220209	CC	AAC
-recovered pasa_asmbl_5053.p1, terminal, 220103, 220209
-recovered pasa_asmbl_5053.p1, internal, 218407, 218522
-recovered pasa_asmbl_5053.p1, internal, 218678, 218773
-recovered pasa_asmbl_5053.p1, internal, 218950, 219082
-recovered pasa_asmbl_5053.p1, internal, 219331, 219411
Valid prediction for GlimmerHMM_glimmerT_26236-T1
Valid prediction for GlimmerHMM_glimmerT_26242-T1
Valid prediction for pasa_asmbl_5050.p1
Couldn't classify 172840, 172864
Sorry, prediction pasa_asmbl_5058.p1 fails validation.
(TTT)	 TG	172840-172864	GT	CAG
(AGA)	 AG	172961-173100	GT	TGG
(AGG)	 AG	174044-174159	GT	AGG
(CGC)	 AG	174336-174441	GT	AGG
(GTT)	 AG	174586-174746	GT	TCG
(TAC)	 AG	176467-176590	GT	AGG
(CCC)	 AG	176859-177017	GT	GGG
(TCT)	 AG	179341-179409	GT	AGG
(GTT)	 AG	179526-179662	GT	AGG
(TAA)	 AG	179751-179874	GT	ATG
(GAT)	 AG	182790-182994	GT	TGG
(AGA)	 AG	183403-183517	GT	GAG
(GTG)	 AG	184345-184477	GT	AGG
(AAG)	 AG	184605-184724	GT	AGG
(GAG)	 AG	184885-184947	GT	AGG
(CCC)	 AG	185053-185186	GT	AGG
(GGA)	 AG	185555-185633	GT	AGG
(GTG)	 AG	185884-186158	GT	AGG
(GTA)	 AG	188377-188380	AG	AAA
-recovered pasa_asmbl_5058.p1, terminal, 188377, 188380
-recovered pasa_asmbl_5058.p1, internal, 172961, 173100
-recovered pasa_asmbl_5058.p1, internal, 174044, 174159
-recovered pasa_asmbl_5058.p1, internal, 174336, 174441
-recovered pasa_asmbl_5058.p1, internal, 174586, 174746
-recovered pasa_asmbl_5058.p1, internal, 176467, 176590
-recovered pasa_asmbl_5058.p1, internal, 176859, 177017
-recovered pasa_asmbl_5058.p1, internal, 179341, 179409
-recovered pasa_asmbl_5058.p1, internal, 179526, 179662
-recovered pasa_asmbl_5058.p1, internal, 179751, 179874
-recovered pasa_asmbl_5058.p1, internal, 182790, 182994
-recovered pasa_asmbl_5058.p1, internal, 183403, 183517
-recovered pasa_asmbl_5058.p1, internal, 184345, 184477
-recovered pasa_asmbl_5058.p1, internal, 184605, 184724
-recovered pasa_asmbl_5058.p1, internal, 184885, 184947
-recovered pasa_asmbl_5058.p1, internal, 185053, 185186
-recovered pasa_asmbl_5058.p1, internal, 185555, 185633
-recovered pasa_asmbl_5058.p1, internal, 185884, 186158
Valid prediction for GlimmerHMM_glimmerT_26259-T1
Valid prediction for snap_scaffold_10-snap.3532-T1
Valid prediction for snap_scaffold_10-snap.3530-T1
Valid prediction for snap_scaffold_10-snap.3521-T1
Valid prediction for snap_scaffold_10-snap.3519-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11043, rend_intergenic: 4985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33928, rend_intergenic: 29148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45070, rend_intergenic: 37972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55864, rend_intergenic: 53371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58873, rend_intergenic: 57036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66891, rend_intergenic: 59939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74158, rend_intergenic: 69127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80618, rend_intergenic: 74183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81209, rend_intergenic: 80985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91972, rend_intergenic: 88518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102234, rend_intergenic: 92075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111387, rend_intergenic: 109791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118702, rend_intergenic: 112190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129093, rend_intergenic: 123175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143981, rend_intergenic: 129307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155280, rend_intergenic: 144373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164095, rend_intergenic: 157542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180186, rend_intergenic: 173458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194944, rend_intergenic: 194309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201814, rend_intergenic: 195056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204649, rend_intergenic: 202689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211488, rend_intergenic: 204649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214504, rend_intergenic: 212332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 246100
-exon list size: 421


building trellis

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59.6    
59.8    
60.0    
60.3    
60.5    
60.8    
61.0    
61.2    
61.5    
61.7    
61.9    
62.2    
62.4    
62.6    
62.9    
63.1    
63.4    
63.6    
63.8    
64.1    
64.3    
64.5    
64.8    
65.0    
65.2    
65.5    
65.7    
66.0    
66.2    
66.4    
66.7    
66.9    
67.1    
67.4    
67.6    
67.8    
68.1    
68.3    
68.6    
68.8    
69.0    
69.3    
69.5    
69.7    
70.0    
70.2    
70.4    
70.7    
70.9    
71.2    
71.4    
71.6    
71.9    
72.1    
72.3    
72.6    
72.8    
73.0    
73.3    
73.5    
73.8    
74.0    
74.2    
74.5    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.1    
76.4    
76.6    
76.8    
77.1    
77.3    
77.5    
77.8    
78.0    
78.3    
78.5    
78.7    
79.0    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.9    
81.1    
81.3    
81.6    
81.8    
82.0    
82.3    
82.5    
82.7    
83.0    
83.2    
83.5    
83.7    
83.9    
84.2    
84.4    
84.6    
84.9    
85.1    
85.3    
85.6    
85.8    
86.1    
86.3    
86.5    
86.8    
87.0    
87.2    
87.5    
87.7    
87.9    
88.2    
88.4    
88.7    
88.9    
89.1    
89.4    
89.6    
89.8    
90.1    
90.3    
90.5    
90.8    
91.0    
91.3    
91.5    
91.7    
92.0    
92.2    
92.4    
92.7    
92.9    
93.1    
93.4    
93.6    
93.9    
94.1    
94.3    
94.6    
94.8    
95.0    
95.3    
95.5    
95.7    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.9    
98.1    
98.3    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 11043, rend_intergenic: 4985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33928, rend_intergenic: 29148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45070, rend_intergenic: 37972  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55864, rend_intergenic: 53371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58873, rend_intergenic: 57036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66891, rend_intergenic: 59939  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74158, rend_intergenic: 69127  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80618, rend_intergenic: 74183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81209, rend_intergenic: 80985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91972, rend_intergenic: 88518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102234, rend_intergenic: 92075  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111387, rend_intergenic: 109791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118702, rend_intergenic: 112190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129093, rend_intergenic: 123175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143981, rend_intergenic: 129307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155280, rend_intergenic: 144373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164095, rend_intergenic: 157542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180186, rend_intergenic: 173458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194944, rend_intergenic: 194309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 201814, rend_intergenic: 195056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204649, rend_intergenic: 202689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211488, rend_intergenic: 204649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214504, rend_intergenic: 212332  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 221001 - 246100
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 221001 - 236227
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 223892 - 236227
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 223892 - 234103