-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_16466135-16541483 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.3357-T1 Valid prediction for GlimmerHMM_glimmerT_26141-T1 Valid prediction for Augustus_model.g17372.t1 Valid prediction for GlimmerHMM_glimmerT_26140-T1 Couldn't classify 67844, 68076 Sorry, prediction pasa_asmbl_3718.p1 fails validation. (ATG) GC 64747-64799 GT AGG (GTT) AG 65343-65426 GT AGG (GGA) AG 65670-65780 GT GGG (TAC) AG 65866-65985 GT GTG (GAG) AG 66426-66729 GT AGG (ATG) AG 67175-67208 GT AAG (AAC) AG 67383-67634 GT AAG (AAT) AG 67844-68076 CT ACC -recovered pasa_asmbl_3718.p1, initial, 64747, 64799 -recovered pasa_asmbl_3718.p1, initial, 67175, 67208 -recovered pasa_asmbl_3718.p1, internal, 65343, 65426 -recovered pasa_asmbl_3718.p1, internal, 65670, 65780 -recovered pasa_asmbl_3718.p1, internal, 65866, 65985 -recovered pasa_asmbl_3718.p1, internal, 66426, 66729 -recovered pasa_asmbl_3718.p1, internal, 67175, 67208 -recovered pasa_asmbl_3718.p1, internal, 67383, 67634 Valid prediction for Augustus_model.g17368.t1 Valid prediction for snap_scaffold_10-snap.3350-T1 Valid prediction for snap_scaffold_10-snap.3355-T1 Valid prediction for snap_scaffold_10-snap.3359-T1 Couldn't classify 13560, 13637 Sorry, prediction pasa_asmbl_3714.p1 fails validation. (ATG) CG 12390-12481 GT AGG (CAC) AG 12720-12945 GT TGG (ACG) AG 13270-13383 GT AGG (GAG) AG 13560-13637 GG ACG -recovered pasa_asmbl_3714.p1, initial, 12390, 12481 -recovered pasa_asmbl_3714.p1, internal, 12720, 12945 -recovered pasa_asmbl_3714.p1, internal, 13270, 13383 Valid prediction for snap_scaffold_10-snap.3356-T1 Valid prediction for GlimmerHMM_glimmerT_26143-T1 Valid prediction for GlimmerHMM_glimmerT_26136-T1 Valid prediction for snap_scaffold_10-snap.3354-T1 Couldn't classify 68288, 69127 Sorry, prediction pasa_asmbl_3725.p1 fails validation. (TTG) TT 68288-69127 GC ATG -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g17371.t1 Couldn't classify 72040, 72191 Sorry, prediction pasa_asmbl_5002.p1 fails validation. (ATA) TC 72040-72191 GT TTG (ATG) AG 73122-73544 GT AAG (ATT) AG 73660-73681 AC GAA add_exon() Sorry, pasa_asmbl_5002.p1 73122-73544-initial-1 is invalid. -recovered pasa_asmbl_5002.p1, initial, 73122, 73544 -recovered pasa_asmbl_5002.p1, terminal, 73660, 73681 -recovered pasa_asmbl_5002.p1, internal, 73122, 73544 Couldn't classify 49882, 49998 Sorry, prediction pasa_asmbl_5010.p2 fails validation. (AGA) TC 49882-49998 GT AGG (AAG) AG 51605-51761 GT GGG (AGG) AG 52138-52286 GA AGG -recovered pasa_asmbl_5010.p2, terminal, 52138, 52286 -recovered pasa_asmbl_5010.p2, internal, 51605, 51761 Valid prediction for HiQ_model.g17365.t1 Valid prediction for GlimmerHMM_glimmerT_26135-T1 Valid prediction for GlimmerHMM_glimmerT_26142-T1 Valid prediction for Augustus_model.g17370.t1 Valid prediction for snap_scaffold_10-snap.3352-T1 Valid prediction for GlimmerHMM_glimmerT_26139-T1 Valid prediction for Augustus_model.g17369.t1 Valid prediction for snap_scaffold_10-snap.3353-T1 Valid prediction for snap_scaffold_10-snap.3358-T1 Valid prediction for HiQ_model.g17366.t1 Valid prediction for CodingQuarry_transcript_5673-T1 Valid prediction for pasa_asmbl_5006.p1 Valid prediction for GlimmerHMM_glimmerT_26134-T1 Valid prediction for CodingQuarry_transcript_5675-T1 Valid prediction for snap_scaffold_10-snap.3351-T1 Valid prediction for GlimmerHMM_glimmerT_26138-T1 Couldn't classify 69500, 70441 Sorry, prediction pasa_asmbl_5003.p1 fails validation. (GAT) GA 69500-70441 CG AAC Couldn't classify 14017, 14559 Sorry, prediction pasa_asmbl_5012.p1 fails validation. (ATG) AT 14017-14559 CA ACC Valid prediction for snap_scaffold_10-snap.3349-T1 Valid prediction for HiQ_model.g17367.t1 Couldn't classify 67371, 67588 Couldn't classify 68302, 69229 Sorry, prediction pasa_asmbl_5004.p1 fails validation. (GTG) TG 67371-67588 GT AGG (GTA) AG 68302-69229 GA ACG Valid prediction for snap_scaffold_10-snap.3347-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_10-snap.3348-T1 Valid prediction for GlimmerHMM_glimmerT_26137-T1 Valid prediction for CodingQuarry_transcript_5674-T1 Valid prediction for CodingQuarry_transcript_5672-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18645, rend_intergenic: 12850 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49581, rend_intergenic: 29781 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60937, rend_intergenic: 57588 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 75349 -exon list size: 114 building trellis 0.9 1.7 2.6 3.4 4.3 5.2 6.0 6.9 7.8 8.6 9.5 10.3 11.2 12.1 12.9 13.8 14.7 15.5 16.4 17.2 18.1 19.0 19.8 20.7 21.6 22.4 23.3 24.1 25.0 25.9 26.7 27.6 28.4 29.3 30.2 31.0 31.9 32.8 33.6 34.5 35.3 36.2 37.1 37.9 38.8 39.7 40.5 41.4 42.2 43.1 44.0 44.8 45.7 46.6 47.4 48.3 49.1 50.0 50.9 51.7 52.6 53.4 54.3 55.2 56.0 56.9 57.8 58.6 59.5 60.3 61.2 62.1 62.9 63.8 64.7 65.5 66.4 67.2 68.1 69.0 69.8 70.7 71.6 72.4 73.3 74.1 75.0 75.9 76.7 77.6 78.4 79.3 80.2 81.0 81.9 82.8 83.6 84.5 85.3 86.2 87.1 87.9 88.8 89.7 90.5 91.4 92.2 93.1 94.0 94.8 95.7 96.6 97.4 98.3 99.1 -found 11 predictions from path traversal Error with prediction: snap lend_intergenic: 18645, rend_intergenic: 12850 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49581, rend_intergenic: 29781 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60937, rend_intergenic: 57588 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 9 predictions persist after filtering for low support