-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_15877589-16078461

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.3215-T1
Valid prediction for GlimmerHMM_glimmerT_26087-T1
Valid prediction for Augustus_model.g17336.t1
Valid prediction for Augustus_model.g17330.t1
Couldn't classify 191384, 191521
Sorry, prediction pasa_asmbl_3703.p1 fails validation.
(ATG)	 AC	187489-187599	GT	CGG
(GCG)	 AG	188046-188250	GT	AGG
(CTT)	 AG	188599-188680	GT	AGG
(CTG)	 AG	189951-190073	GT	GCG
(ACT)	 AG	190854-190957	GT	AGG
(ACT)	 AG	191053-191225	GT	AGG
(AAG)	 AG	191384-191521	AT	CCA
-recovered pasa_asmbl_3703.p1, initial, 187489, 187599
-recovered pasa_asmbl_3703.p1, internal, 188046, 188250
-recovered pasa_asmbl_3703.p1, internal, 188599, 188680
-recovered pasa_asmbl_3703.p1, internal, 189951, 190073
-recovered pasa_asmbl_3703.p1, internal, 190854, 190957
-recovered pasa_asmbl_3703.p1, internal, 191053, 191225
Valid prediction for snap_scaffold_10-snap.3256-T1
Valid prediction for GlimmerHMM_glimmerT_26079-T1
Valid prediction for snap_scaffold_10-snap.3235-T1
Valid prediction for snap_scaffold_10-snap.3213-T1
Valid prediction for Augustus_model.g17338.t1
Valid prediction for snap_scaffold_10-snap.3243-T1
Valid prediction for GlimmerHMM_glimmerT_26083-T1
Valid prediction for snap_scaffold_10-snap.3225-T1
Valid prediction for snap_scaffold_10-snap.3229-T1
Valid prediction for GlimmerHMM_glimmerT_26078-T1
Valid prediction for GlimmerHMM_glimmerT_26084-T1
Valid prediction for snap_scaffold_10-snap.3237-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_10-snap.3251-T1
Valid prediction for snap_scaffold_10-snap.3248-T1
Valid prediction for snap_scaffold_10-snap.3242-T1
Valid prediction for Augustus_model.g17339.t1
Valid prediction for snap_scaffold_10-snap.3246-T1
Couldn't classify 60496, 60577
Couldn't classify 63218, 63462
Sorry, prediction pasa_asmbl_3699.p2 fails validation.
(TCG)	 CA	60496-60577	GT	CTG
(ATA)	 AG	61876-62007	GT	AGG
(GCC)	 AG	63218-63462	AT	AGA
-recovered pasa_asmbl_3699.p2, internal, 61876, 62007
Valid prediction for snap_scaffold_10-snap.3214-T1
Valid prediction for snap_scaffold_10-snap.3227-T1
Couldn't classify 194831, 194900
Sorry, prediction pasa_asmbl_3705.p1 fails validation.
(AAA)	 AG	194831-194900	GT	AGG
(GAA)	 AG	197129-197229	GT	AGG
(TTC)	 AG	198347-198517	GT	TTG
(GTC)	 AG	198833-199012	GC	AGG
-recovered pasa_asmbl_3705.p1, terminal, 198833, 199012
-recovered pasa_asmbl_3705.p1, internal, 194831, 194900
-recovered pasa_asmbl_3705.p1, internal, 197129, 197229
-recovered pasa_asmbl_3705.p1, internal, 198347, 198517
-recovered pasa_asmbl_3705.p1, internal, 198833, 199012
Valid prediction for snap_scaffold_10-snap.3222-T1
Valid prediction for snap_scaffold_10-snap.3238-T1
Valid prediction for snap_scaffold_10-snap.3245-T1
Valid prediction for GlimmerHMM_glimmerT_26073-T1
Valid prediction for GlimmerHMM_glimmerT_26075-T1
Valid prediction for snap_scaffold_10-snap.3212-T1
Valid prediction for GlimmerHMM_glimmerT_26077-T1
Valid prediction for snap_scaffold_10-snap.3231-T1
Valid prediction for snap_scaffold_10-snap.3220-T1
Valid prediction for GlimmerHMM_glimmerT_26088-T1
Valid prediction for GlimmerHMM_glimmerT_26089-T1
Valid prediction for snap_scaffold_10-snap.3232-T1
Valid prediction for GlimmerHMM_glimmerT_26076-T1
Valid prediction for snap_scaffold_10-snap.3254-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.3219-T1
Valid prediction for GlimmerHMM_glimmerT_26074-T1
Valid prediction for snap_scaffold_10-snap.3252-T1
Valid prediction for snap_scaffold_10-snap.3255-T1
Valid prediction for snap_scaffold_10-snap.3240-T1
Valid prediction for snap_scaffold_10-snap.3226-T1
Couldn't classify 96856, 97062
Sorry, prediction pasa_asmbl_5170.p1 fails validation.
(GGA)	 AA	96856-97062	GT	AGG
(ATG)	 AG	99197-99365	GT	AGG
(GTG)	 AG	101225-101391	AG	AGA
-recovered pasa_asmbl_5170.p1, initial, 99197, 99365
-recovered pasa_asmbl_5170.p1, terminal, 101225, 101391
-recovered pasa_asmbl_5170.p1, internal, 99197, 99365
Valid prediction for snap_scaffold_10-snap.3217-T1
Valid prediction for snap_scaffold_10-snap.3241-T1
Valid prediction for HiQ_model.g17334.t1
Couldn't classify 136756, 137097
Sorry, prediction pasa_asmbl_3701.p1 fails validation.
(ATG)	 CA	136756-137097	TC	CCT
Valid prediction for snap_scaffold_10-snap.3250-T1
Valid prediction for Augustus_model.g17333.t1
Valid prediction for GlimmerHMM_glimmerT_26086-T1
Valid prediction for GlimmerHMM_glimmerT_26085-T1
Valid prediction for snap_scaffold_10-snap.3236-T1
Valid prediction for snap_scaffold_10-snap.3234-T1
Valid prediction for Augustus_model.g17337.t1
Valid prediction for GlimmerHMM_glimmerT_26081-T1
Valid prediction for snap_scaffold_10-snap.3221-T1
Valid prediction for snap_scaffold_10-snap.3239-T1
Valid prediction for GlimmerHMM_glimmerT_26072-T1
Valid prediction for snap_scaffold_10-snap.3247-T1
Valid prediction for snap_scaffold_10-snap.3223-T1
Couldn't classify 90595, 90727
Couldn't classify 93431, 93588
Sorry, prediction pasa_asmbl_5101.p1 fails validation.
(TTC)	 GG	90595-90727	GT	CAG
(TAG)	 AG	91251-91364	GT	AGG
(TCA)	 AG	93431-93588	GG	AGG
-recovered pasa_asmbl_5101.p1, internal, 91251, 91364
Valid prediction for snap_scaffold_10-snap.3224-T1
Valid prediction for snap_scaffold_10-snap.3216-T1
Valid prediction for snap_scaffold_10-snap.3233-T1
Valid prediction for Augustus_model.g17331.t1
Valid prediction for GlimmerHMM_glimmerT_26082-T1
Valid prediction for snap_scaffold_10-snap.3253-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_10-snap.3218-T1
Valid prediction for snap_scaffold_10-snap.3249-T1
Valid prediction for GlimmerHMM_glimmerT_26080-T1
Valid prediction for snap_scaffold_10-snap.3244-T1
Valid prediction for Augustus_model.g17335.t1
Valid prediction for snap_scaffold_10-snap.3228-T1
Valid prediction for Augustus_model.g17332.t1
Valid prediction for snap_scaffold_10-snap.3230-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43918, rend_intergenic: 23688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58047, rend_intergenic: 54415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82193, rend_intergenic: 79625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82953, rend_intergenic: 82513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86354, rend_intergenic: 83004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86582, rend_intergenic: 86453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91188, rend_intergenic: 87281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99477, rend_intergenic: 92799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101681, rend_intergenic: 99791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111181, rend_intergenic: 108947  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112212, rend_intergenic: 111372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133833, rend_intergenic: 120498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135819, rend_intergenic: 133846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149501, rend_intergenic: 136952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158153, rend_intergenic: 150495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160973, rend_intergenic: 158389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171735, rend_intergenic: 166070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175920, rend_intergenic: 173083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180162, rend_intergenic: 176072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192931, rend_intergenic: 188712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 200873
-exon list size: 279


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.1    
2.5    
2.8    
3.2    
3.6    
3.9    
4.3    
4.6    
5.0    
5.3    
5.7    
6.0    
6.4    
6.8    
7.1    
7.5    
7.8    
8.2    
8.5    
8.9    
9.3    
9.6    
10.0    
10.3    
10.7    
11.0    
11.4    
11.7    
12.1    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.6    
14.9    
15.3    
15.7    
16.0    
16.4    
16.7    
17.1    
17.4    
17.8    
18.1    
18.5    
18.9    
19.2    
19.6    
19.9    
20.3    
20.6    
21.0    
21.4    
21.7    
22.1    
22.4    
22.8    
23.1    
23.5    
23.8    
24.2    
24.6    
24.9    
25.3    
25.6    
26.0    
26.3    
26.7    
27.0    
27.4    
27.8    
28.1    
28.5    
28.8    
29.2    
29.5    
29.9    
30.2    
30.6    
31.0    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.2    
35.6    
35.9    
36.3    
36.7    
37.0    
37.4    
37.7    
38.1    
38.4    
38.8    
39.1    
39.5    
39.9    
40.2    
40.6    
40.9    
41.3    
41.6    
42.0    
42.3    
42.7    
43.1    
43.4    
43.8    
44.1    
44.5    
44.8    
45.2    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.7    
48.0    
48.4    
48.8    
49.1    
49.5    
49.8    
50.2    
50.5    
50.9    
51.2    
51.6    
52.0    
52.3    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.8    
55.2    
55.5    
55.9    
56.2    
56.6    
56.9    
57.3    
57.7    
58.0    
58.4    
58.7    
59.1    
59.4    
59.8    
60.1    
60.5    
60.9    
61.2    
61.6    
61.9    
62.3    
62.6    
63.0    
63.3    
63.7    
64.1    
64.4    
64.8    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.0    
69.4    
69.8    
70.1    
70.5    
70.8    
71.2    
71.5    
71.9    
72.2    
72.6    
73.0    
73.3    
73.7    
74.0    
74.4    
74.7    
75.1    
75.4    
75.8    
76.2    
76.5    
76.9    
77.2    
77.6    
77.9    
78.3    
78.6    
79.0    
79.4    
79.7    
80.1    
80.4    
80.8    
81.1    
81.5    
81.9    
82.2    
82.6    
82.9    
83.3    
83.6    
84.0    
84.3    
84.7    
85.1    
85.4    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.9    
88.3    
88.6    
89.0    
89.3    
89.7    
90.0    
90.4    
90.7    
91.1    
91.5    
91.8    
92.2    
92.5    
92.9    
93.2    
93.6    
94.0    
94.3    
94.7    
95.0    
95.4    
95.7    
96.1    
96.4    
96.8    
97.2    
97.5    
97.9    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 43918, rend_intergenic: 23688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58047, rend_intergenic: 54415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82193, rend_intergenic: 79625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82953, rend_intergenic: 82513  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86354, rend_intergenic: 83004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86582, rend_intergenic: 86453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91188, rend_intergenic: 87281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99477, rend_intergenic: 92799  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101681, rend_intergenic: 99791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111181, rend_intergenic: 108947  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112212, rend_intergenic: 111372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133833, rend_intergenic: 120498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135819, rend_intergenic: 133846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149501, rend_intergenic: 136952  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158153, rend_intergenic: 150495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160973, rend_intergenic: 158389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171735, rend_intergenic: 166070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175920, rend_intergenic: 173083  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180162, rend_intergenic: 176072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192931, rend_intergenic: 188712  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support