-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_15485310-15669470

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_3692.p1
Valid prediction for Augustus_model.g17301.t1
Valid prediction for snap_scaffold_10-snap.3159-T1
Valid prediction for snap_scaffold_10-snap.3157-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_26044-T1
Valid prediction for Augustus_model.g17313.t1
Valid prediction for snap_scaffold_10-snap.3148-T1
Valid prediction for GlimmerHMM_glimmerT_26028-T1
Valid prediction for snap_scaffold_10-snap.3165-T1
Valid prediction for snap_scaffold_10-snap.3156-T1
Valid prediction for GlimmerHMM_glimmerT_26032-T1
Valid prediction for GlimmerHMM_glimmerT_26046-T1
Valid prediction for Augustus_model.g17307.t1
Valid prediction for snap_scaffold_10-snap.3140-T1
Valid prediction for HiQ_model.g17303.t1
Valid prediction for snap_scaffold_10-snap.3134-T1
Valid prediction for snap_scaffold_10-snap.3151-T1
Valid prediction for snap_scaffold_10-snap.3168-T1
Valid prediction for snap_scaffold_10-snap.3167-T1
Valid prediction for Augustus_model.g17312.t1
Valid prediction for GlimmerHMM_glimmerT_26029-T1
Valid prediction for GlimmerHMM_glimmerT_26027-T1
Valid prediction for snap_scaffold_10-snap.3130-T1
Valid prediction for Augustus_model.g17302.t1
Valid prediction for Augustus_model.g17306.t1
Valid prediction for GlimmerHMM_glimmerT_26037-T1
Valid prediction for snap_scaffold_10-snap.3162-T1
Valid prediction for GlimmerHMM_glimmerT_26033-T1
Couldn't classify 107394, 107840
Sorry, prediction pasa_asmbl_3694.p1 fails validation.
(ATT)	 AC	107394-107840	TA	GGT
Valid prediction for snap_scaffold_10-snap.3132-T1
Valid prediction for snap_scaffold_10-snap.3139-T1
Valid prediction for CodingQuarry_transcript_5665-T1
Valid prediction for GlimmerHMM_glimmerT_26038-T1
Valid prediction for Augustus_model.g17305.t1
Valid prediction for snap_scaffold_10-snap.3152-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.3155-T1
Valid prediction for Augustus_model.g17309.t1
Valid prediction for snap_scaffold_10-snap.3138-T1
Valid prediction for snap_scaffold_10-snap.3137-T1
Valid prediction for snap_scaffold_10-snap.3145-T1
Valid prediction for GlimmerHMM_glimmerT_26047-T1
Valid prediction for snap_scaffold_10-snap.3133-T1
Valid prediction for Augustus_model.g17310.t1
Valid prediction for snap_scaffold_10-snap.3150-T1
Valid prediction for snap_scaffold_10-snap.3164-T1
Valid prediction for GlimmerHMM_glimmerT_26035-T1
Valid prediction for snap_scaffold_10-snap.3160-T1
Valid prediction for snap_scaffold_10-snap.3135-T1
Valid prediction for snap_scaffold_10-snap.3127-T1
Valid prediction for snap_scaffold_10-snap.3147-T1
Valid prediction for Augustus_model.g17308.t1
Valid prediction for GlimmerHMM_glimmerT_26048-T1
Valid prediction for snap_scaffold_10-snap.3129-T1
Valid prediction for snap_scaffold_10-snap.3128-T1
Valid prediction for snap_scaffold_10-snap.3166-T1
Valid prediction for GlimmerHMM_glimmerT_26031-T1
Valid prediction for GlimmerHMM_glimmerT_26036-T1
Valid prediction for GlimmerHMM_glimmerT_26041-T1
Valid prediction for snap_scaffold_10-snap.3136-T1
Valid prediction for snap_scaffold_10-snap.3163-T1
Valid prediction for snap_scaffold_10-snap.3161-T1
Valid prediction for snap_scaffold_10-snap.3143-T1
Valid prediction for GlimmerHMM_glimmerT_26045-T1
Valid prediction for GlimmerHMM_glimmerT_26042-T1
Valid prediction for snap_scaffold_10-snap.3158-T1
Valid prediction for snap_scaffold_10-snap.3146-T1
Valid prediction for snap_scaffold_10-snap.3131-T1
Valid prediction for GlimmerHMM_glimmerT_26043-T1
Valid prediction for GlimmerHMM_glimmerT_26039-T1
Valid prediction for Augustus_model.g17314.t1
Valid prediction for snap_scaffold_10-snap.3153-T1
Valid prediction for Augustus_model.g17311.t1
Valid prediction for Augustus_model.g17315.t1
Valid prediction for Augustus_model.g17304.t1
Valid prediction for snap_scaffold_10-snap.3149-T1
Valid prediction for GlimmerHMM_glimmerT_26040-T1
Valid prediction for snap_scaffold_10-snap.3154-T1
Valid prediction for snap_scaffold_10-snap.3141-T1
Valid prediction for GlimmerHMM_glimmerT_26034-T1
Valid prediction for snap_scaffold_10-snap.3142-T1
Valid prediction for GlimmerHMM_glimmerT_26030-T1
Valid prediction for snap_scaffold_10-snap.3144-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20668, rend_intergenic: 12371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45342, rend_intergenic: 37534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72721, rend_intergenic: 70392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112728, rend_intergenic: 108659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114910, rend_intergenic: 113397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135864, rend_intergenic: 133522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142771, rend_intergenic: 138612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153636, rend_intergenic: 145215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165234, rend_intergenic: 158847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 184161
-exon list size: 301


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.6    
3.0    
3.3    
3.6    
4.0    
4.3    
4.6    
5.0    
5.3    
5.6    
5.9    
6.3    
6.6    
6.9    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.2    
9.6    
9.9    
10.2    
10.6    
10.9    
11.2    
11.6    
11.9    
12.2    
12.5    
12.9    
13.2    
13.5    
13.9    
14.2    
14.5    
14.9    
15.2    
15.5    
15.8    
16.2    
16.5    
16.8    
17.2    
17.5    
17.8    
18.2    
18.5    
18.8    
19.1    
19.5    
19.8    
20.1    
20.5    
20.8    
21.1    
21.5    
21.8    
22.1    
22.4    
22.8    
23.1    
23.4    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.1    
26.4    
26.7    
27.1    
27.4    
27.7    
28.1    
28.4    
28.7    
29.0    
29.4    
29.7    
30.0    
30.4    
30.7    
31.0    
31.4    
31.7    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.6    
36.0    
36.3    
36.6    
37.0    
37.3    
37.6    
38.0    
38.3    
38.6    
38.9    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.3    
41.6    
41.9    
42.2    
42.6    
42.9    
43.2    
43.6    
43.9    
44.2    
44.6    
44.9    
45.2    
45.5    
45.9    
46.2    
46.5    
46.9    
47.2    
47.5    
47.9    
48.2    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.8    
52.1    
52.5    
52.8    
53.1    
53.5    
53.8    
54.1    
54.5    
54.8    
55.1    
55.4    
55.8    
56.1    
56.4    
56.8    
57.1    
57.4    
57.8    
58.1    
58.4    
58.7    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.1    
61.4    
61.7    
62.0    
62.4    
62.7    
63.0    
63.4    
63.7    
64.0    
64.4    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.3    
68.6    
69.0    
69.3    
69.6    
70.0    
70.3    
70.6    
71.0    
71.3    
71.6    
71.9    
72.3    
72.6    
72.9    
73.3    
73.6    
73.9    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.6    
76.9    
77.2    
77.6    
77.9    
78.2    
78.5    
78.9    
79.2    
79.5    
79.9    
80.2    
80.5    
80.9    
81.2    
81.5    
81.8    
82.2    
82.5    
82.8    
83.2    
83.5    
83.8    
84.2    
84.5    
84.8    
85.1    
85.5    
85.8    
86.1    
86.5    
86.8    
87.1    
87.5    
87.8    
88.1    
88.4    
88.8    
89.1    
89.4    
89.8    
90.1    
90.4    
90.8    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.1    
93.4    
93.7    
94.1    
94.4    
94.7    
95.0    
95.4    
95.7    
96.0    
96.4    
96.7    
97.0    
97.4    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 20668, rend_intergenic: 12371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45342, rend_intergenic: 37534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72721, rend_intergenic: 70392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112728, rend_intergenic: 108659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 114910, rend_intergenic: 113397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135864, rend_intergenic: 133522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142771, rend_intergenic: 138612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153636, rend_intergenic: 145215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165234, rend_intergenic: 158847  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support