-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_14889460-15080841

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_25973-T1
Valid prediction for snap_scaffold_10-snap.3034-T1
Valid prediction for snap_scaffold_10-snap.3023-T1
Valid prediction for snap_scaffold_10-snap.3031-T1
Valid prediction for snap_scaffold_10-snap.3019-T1
Valid prediction for snap_scaffold_10-snap.3017-T1
Valid prediction for GlimmerHMM_glimmerT_25967-T1
Valid prediction for snap_scaffold_10-snap.3022-T1
Valid prediction for snap_scaffold_10-snap.3004-T1
Valid prediction for GlimmerHMM_glimmerT_25952-T1
Valid prediction for snap_scaffold_10-snap.3007-T1
Valid prediction for snap_scaffold_10-snap.2999-T1
Valid prediction for snap_scaffold_10-snap.3036-T1
Valid prediction for GlimmerHMM_glimmerT_25962-T1
Valid prediction for snap_scaffold_10-snap.3030-T1
Valid prediction for GlimmerHMM_glimmerT_25954-T1
Valid prediction for snap_scaffold_10-snap.3005-T1
Valid prediction for GlimmerHMM_glimmerT_25955-T1
Valid prediction for snap_scaffold_10-snap.2997-T1
Valid prediction for snap_scaffold_10-snap.2993-T1
Valid prediction for GlimmerHMM_glimmerT_25956-T1
Valid prediction for snap_scaffold_10-snap.3008-T1
Valid prediction for snap_scaffold_10-snap.3024-T1
Valid prediction for GlimmerHMM_glimmerT_25969-T1
Valid prediction for snap_scaffold_10-snap.2992-T1
Valid prediction for snap_scaffold_10-snap.3009-T1
Valid prediction for GlimmerHMM_glimmerT_25957-T1
Valid prediction for snap_scaffold_10-snap.3033-T1
Valid prediction for snap_scaffold_10-snap.3032-T1
Valid prediction for snap_scaffold_10-snap.3003-T1
Valid prediction for GlimmerHMM_glimmerT_25947-T1
Valid prediction for snap_scaffold_10-snap.3012-T1
Valid prediction for snap_scaffold_10-snap.3010-T1
Valid prediction for snap_scaffold_10-snap.3028-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_10-snap.3027-T1
Valid prediction for Augustus_model.g17254.t1
Valid prediction for GlimmerHMM_glimmerT_25968-T1
Valid prediction for snap_scaffold_10-snap.2991-T1
Valid prediction for GlimmerHMM_glimmerT_25949-T1
Valid prediction for snap_scaffold_10-snap.3029-T1
Valid prediction for GlimmerHMM_glimmerT_25972-T1
Valid prediction for snap_scaffold_10-snap.3013-T1
Valid prediction for GlimmerHMM_glimmerT_25974-T1
Valid prediction for GlimmerHMM_glimmerT_25971-T1
Valid prediction for GlimmerHMM_glimmerT_25951-T1
Valid prediction for snap_scaffold_10-snap.2994-T1
Valid prediction for CodingQuarry_transcript_5657-T1
Valid prediction for snap_scaffold_10-snap.2996-T1
Valid prediction for snap_scaffold_10-snap.3021-T1
Valid prediction for Augustus_model.g17253.t1
Valid prediction for GlimmerHMM_glimmerT_25970-T1
Valid prediction for snap_scaffold_10-snap.3016-T1
Valid prediction for Augustus_model.g17251.t1
Valid prediction for snap_scaffold_10-snap.3006-T1
Sorry, intron length (6) is less than minimum required (10)
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_10-snap.3002-T1
Valid prediction for GlimmerHMM_glimmerT_25948-T1
Valid prediction for snap_scaffold_10-snap.3000-T1
Valid prediction for Augustus_model.g17252.t1
Valid prediction for GlimmerHMM_glimmerT_25960-T1
Valid prediction for GlimmerHMM_glimmerT_25963-T1
Couldn't classify 181973, 182138
Couldn't classify 183282, 183327
Sorry, prediction pasa_asmbl_4968.p1 fails validation.
(GGT)	 GT	181973-182138	GT	GAG
(TTT)	 AG	182348-182486	GT	AAG
(TAA)	 AG	183282-183327	AG	ACA
-recovered pasa_asmbl_4968.p1, internal, 182348, 182486
Valid prediction for snap_scaffold_10-snap.3011-T1
Valid prediction for Augustus_model.g17259.t1
Valid prediction for snap_scaffold_10-snap.3026-T1
Valid prediction for snap_scaffold_10-snap.3020-T1
Valid prediction for Augustus_model.g17257.t1
Valid prediction for Augustus_model.g17256.t1
Valid prediction for Augustus_model.g17260.t1
Valid prediction for GlimmerHMM_glimmerT_25953-T1
Valid prediction for snap_scaffold_10-snap.3025-T1
Valid prediction for GlimmerHMM_glimmerT_25959-T1
Valid prediction for GlimmerHMM_glimmerT_25950-T1
Valid prediction for Augustus_model.g17258.t1
Valid prediction for Augustus_model.g17255.t1
Valid prediction for snap_scaffold_10-snap.3001-T1
Valid prediction for GlimmerHMM_glimmerT_25966-T1
Valid prediction for GlimmerHMM_glimmerT_25958-T1
Valid prediction for snap_scaffold_10-snap.3014-T1
Valid prediction for snap_scaffold_10-snap.3018-T1
Valid prediction for snap_scaffold_10-snap.2998-T1
Valid prediction for snap_scaffold_10-snap.2995-T1
Valid prediction for snap_scaffold_10-snap.3015-T1
Valid prediction for snap_scaffold_10-snap.3035-T1
Valid prediction for GlimmerHMM_glimmerT_25965-T1
Valid prediction for GlimmerHMM_glimmerT_25961-T1
Valid prediction for GlimmerHMM_glimmerT_25964-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13639, rend_intergenic: 9585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18142, rend_intergenic: 13727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21189, rend_intergenic: 19585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32276, rend_intergenic: 23960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46413, rend_intergenic: 32307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56136, rend_intergenic: 47037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65057, rend_intergenic: 56955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86327, rend_intergenic: 65226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90686, rend_intergenic: 86524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95300, rend_intergenic: 92826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103702, rend_intergenic: 95651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120892, rend_intergenic: 119823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121355, rend_intergenic: 121140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126663, rend_intergenic: 121843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145117, rend_intergenic: 134811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146171, rend_intergenic: 145666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153182, rend_intergenic: 150548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155950, rend_intergenic: 153443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178731, rend_intergenic: 158723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187133, rend_intergenic: 183959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 191382
-exon list size: 423


building trellis

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97.6    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 13639, rend_intergenic: 9585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18142, rend_intergenic: 13727  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21189, rend_intergenic: 19585  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32276, rend_intergenic: 23960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46413, rend_intergenic: 32307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56136, rend_intergenic: 47037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65057, rend_intergenic: 56955  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86327, rend_intergenic: 65226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90686, rend_intergenic: 86524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95300, rend_intergenic: 92826  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103702, rend_intergenic: 95651  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120892, rend_intergenic: 119823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121355, rend_intergenic: 121140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126663, rend_intergenic: 121843  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145117, rend_intergenic: 134811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146171, rend_intergenic: 145666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153182, rend_intergenic: 150548  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155950, rend_intergenic: 153443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178731, rend_intergenic: 158723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187133, rend_intergenic: 183959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 178732 - 191382
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support