-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_10/scaffold_10_14246923-14501026

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_10-snap.2891-T1
Valid prediction for HiQ_model.g17201.t1
Valid prediction for snap_scaffold_10-snap.2879-T1
Valid prediction for snap_scaffold_10-snap.2848-T1
Valid prediction for snap_scaffold_10-snap.2869-T1
Valid prediction for GlimmerHMM_glimmerT_25872-T1
Valid prediction for GlimmerHMM_glimmerT_25864-T1
Valid prediction for Augustus_model.g17209.t1
Valid prediction for GlimmerHMM_glimmerT_25875-T1
Valid prediction for GlimmerHMM_glimmerT_25857-T1
Valid prediction for snap_scaffold_10-snap.2852-T1
Valid prediction for snap_scaffold_10-snap.2856-T1
Valid prediction for GlimmerHMM_glimmerT_25871-T1
Valid prediction for GlimmerHMM_glimmerT_25870-T1
Valid prediction for Augustus_model.g17205.t1
Valid prediction for snap_scaffold_10-snap.2885-T1
Valid prediction for GlimmerHMM_glimmerT_25861-T1
Valid prediction for GlimmerHMM_glimmerT_25869-T1
Valid prediction for GlimmerHMM_glimmerT_25885-T1
Valid prediction for snap_scaffold_10-snap.2873-T1
Valid prediction for GlimmerHMM_glimmerT_25860-T1
Valid prediction for GlimmerHMM_glimmerT_25887-T1
Valid prediction for snap_scaffold_10-snap.2863-T1
Valid prediction for snap_scaffold_10-snap.2878-T1
Valid prediction for snap_scaffold_10-snap.2884-T1
Valid prediction for snap_scaffold_10-snap.2881-T1
Valid prediction for Augustus_model.g17210.t1
Valid prediction for snap_scaffold_10-snap.2897-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_10-snap.2860-T1
Valid prediction for snap_scaffold_10-snap.2866-T1
Valid prediction for GlimmerHMM_glimmerT_25878-T1
Valid prediction for snap_scaffold_10-snap.2877-T1
Valid prediction for snap_scaffold_10-snap.2862-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_25874-T1
Valid prediction for snap_scaffold_10-snap.2875-T1
Valid prediction for snap_scaffold_10-snap.2861-T1
Valid prediction for GlimmerHMM_glimmerT_25881-T1
Valid prediction for GlimmerHMM_glimmerT_25858-T1
Valid prediction for snap_scaffold_10-snap.2858-T1
Valid prediction for snap_scaffold_10-snap.2887-T1
Valid prediction for snap_scaffold_10-snap.2855-T1
Valid prediction for snap_scaffold_10-snap.2849-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 13634, 13764
Sorry, prediction pasa_asmbl_3644.p1 fails validation.
(ATG)	 CC	7252-7332	GT	GGG
(GAC)	 AG	8147-8255	GT	TGG
(AGT)	 AG	10839-10935	GT	AGG
(GTA)	 AG	11630-11768	GT	TGG
(GTC)	 AG	11864-12056	GT	GGG
(GCT)	 AG	12370-12667	GT	AGG
(TGA)	 AG	13045-13220	GT	AGG
(GTA)	 AG	13634-13764	GT	AGG
-recovered pasa_asmbl_3644.p1, initial, 7252, 7332
-recovered pasa_asmbl_3644.p1, internal, 8147, 8255
-recovered pasa_asmbl_3644.p1, internal, 10839, 10935
-recovered pasa_asmbl_3644.p1, internal, 11630, 11768
-recovered pasa_asmbl_3644.p1, internal, 11864, 12056
-recovered pasa_asmbl_3644.p1, internal, 12370, 12667
-recovered pasa_asmbl_3644.p1, internal, 13045, 13220
-recovered pasa_asmbl_3644.p1, internal, 13634, 13764
Valid prediction for snap_scaffold_10-snap.2888-T1
Valid prediction for GlimmerHMM_glimmerT_25873-T1
Valid prediction for GlimmerHMM_glimmerT_25866-T1
Valid prediction for GlimmerHMM_glimmerT_25868-T1
Valid prediction for GlimmerHMM_glimmerT_25883-T1
Valid prediction for snap_scaffold_10-snap.2868-T1
Valid prediction for Augustus_model.g17211.t1
Valid prediction for GlimmerHMM_glimmerT_25880-T1
Valid prediction for snap_scaffold_10-snap.2895-T1
Valid prediction for snap_scaffold_10-snap.2851-T1
Valid prediction for GlimmerHMM_glimmerT_25876-T1
Valid prediction for GlimmerHMM_glimmerT_25854-T1
Valid prediction for snap_scaffold_10-snap.2893-T1
Valid prediction for snap_scaffold_10-snap.2864-T1
Valid prediction for snap_scaffold_10-snap.2845-T1
Sorry, intron length (9) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_25865-T1
Valid prediction for GlimmerHMM_glimmerT_25856-T1
Valid prediction for snap_scaffold_10-snap.2859-T1
Valid prediction for snap_scaffold_10-snap.2847-T1
Valid prediction for snap_scaffold_10-snap.2883-T1
Valid prediction for GlimmerHMM_glimmerT_25855-T1
Valid prediction for snap_scaffold_10-snap.2880-T1
Valid prediction for snap_scaffold_10-snap.2867-T1
Valid prediction for GlimmerHMM_glimmerT_25884-T1
Valid prediction for GlimmerHMM_glimmerT_25862-T1
Valid prediction for snap_scaffold_10-snap.2892-T1
Valid prediction for snap_scaffold_10-snap.2870-T1
Valid prediction for snap_scaffold_10-snap.2886-T1
Valid prediction for GlimmerHMM_glimmerT_25867-T1
Valid prediction for GlimmerHMM_glimmerT_25879-T1
Valid prediction for GlimmerHMM_glimmerT_25863-T1
Valid prediction for snap_scaffold_10-snap.2890-T1
Valid prediction for Augustus_model.g17207.t1
Valid prediction for snap_scaffold_10-snap.2894-T1
Valid prediction for Augustus_model.g17208.t1
Valid prediction for snap_scaffold_10-snap.2850-T1
Valid prediction for GlimmerHMM_glimmerT_25886-T1
Valid prediction for snap_scaffold_10-snap.2853-T1
Valid prediction for Augustus_model.g17202.t1
Valid prediction for snap_scaffold_10-snap.2874-T1
Valid prediction for snap_scaffold_10-snap.2846-T1
Valid prediction for snap_scaffold_10-snap.2876-T1
Valid prediction for snap_scaffold_10-snap.2865-T1
Valid prediction for snap_scaffold_10-snap.2898-T1
Valid prediction for Augustus_model.g17204.t1
Valid prediction for Augustus_model.g17206.t1
Valid prediction for GlimmerHMM_glimmerT_25877-T1
Valid prediction for snap_scaffold_10-snap.2871-T1
Valid prediction for GlimmerHMM_glimmerT_25853-T1
Valid prediction for snap_scaffold_10-snap.2872-T1
Valid prediction for snap_scaffold_10-snap.2857-T1
Valid prediction for GlimmerHMM_glimmerT_25859-T1
Valid prediction for GlimmerHMM_glimmerT_25882-T1
Valid prediction for snap_scaffold_10-snap.2896-T1
Valid prediction for snap_scaffold_10-snap.2882-T1
Valid prediction for GlimmerHMM_glimmerT_25888-T1
Valid prediction for snap_scaffold_10-snap.2854-T1
Valid prediction for Augustus_model.g17203.t1
Valid prediction for snap_scaffold_10-snap.2889-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14632, rend_intergenic: 11920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42191, rend_intergenic: 22087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52706, rend_intergenic: 43393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59398, rend_intergenic: 52785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72710, rend_intergenic: 59401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74444, rend_intergenic: 72779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77728, rend_intergenic: 75345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84154, rend_intergenic: 78610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119313, rend_intergenic: 84173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125934, rend_intergenic: 119722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132628, rend_intergenic: 125937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141587, rend_intergenic: 133951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161671, rend_intergenic: 141645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168298, rend_intergenic: 164704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179523, rend_intergenic: 169182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183955, rend_intergenic: 181403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195121, rend_intergenic: 191468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197770, rend_intergenic: 195863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204863, rend_intergenic: 197920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209981, rend_intergenic: 205421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213050, rend_intergenic: 211051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215883, rend_intergenic: 213087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220786, rend_intergenic: 217618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222974, rend_intergenic: 222007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223527, rend_intergenic: 223238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225785, rend_intergenic: 224043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246788, rend_intergenic: 237730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 254104
-exon list size: 423


building trellis

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28.9    
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29.6    
29.9    
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30.4    
30.6    
30.8    
31.1    
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31.5    
31.8    
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32.2    
32.5    
32.7    
32.9    
33.2    
33.4    
33.6    
33.9    
34.1    
34.4    
34.6    
34.8    
35.1    
35.3    
35.5    
35.8    
36.0    
36.2    
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36.7    
36.9    
37.2    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
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39.8    
40.0    
40.2    
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40.7    
40.9    
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41.4    
41.6    
41.9    
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42.4    
42.6    
42.8    
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43.5    
43.8    
44.0    
44.2    
44.5    
44.7    
44.9    
45.2    
45.4    
45.6    
45.9    
46.1    
46.4    
46.6    
46.8    
47.1    
47.3    
47.5    
47.8    
48.0    
48.2    
48.5    
48.7    
48.9    
49.2    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.8    
51.1    
51.3    
51.5    
51.8    
52.0    
52.2    
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52.9    
53.2    
53.4    
53.6    
53.9    
54.1    
54.4    
54.6    
54.8    
55.1    
55.3    
55.5    
55.8    
56.0    
56.2    
56.5    
56.7    
56.9    
57.2    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.8    
59.1    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
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62.6    
62.8    
63.1    
63.3    
63.5    
63.8    
64.0    
64.2    
64.5    
64.7    
64.9    
65.2    
65.4    
65.6    
65.9    
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66.4    
66.6    
66.8    
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67.3    
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68.0    
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68.9    
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69.4    
69.6    
69.9    
70.1    
70.4    
70.6    
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72.0    
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72.9    
73.2    
73.4    
73.6    
73.9    
74.1    
74.4    
74.6    
74.8    
75.1    
75.3    
75.5    
75.8    
76.0    
76.2    
76.5    
76.7    
76.9    
77.2    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.8    
79.1    
79.3    
79.5    
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80.0    
80.2    
80.5    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.8    
83.1    
83.3    
83.5    
83.8    
84.0    
84.2    
84.5    
84.7    
84.9    
85.2    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.5    
87.8    
88.0    
88.2    
88.5    
88.7    
88.9    
89.2    
89.4    
89.6    
89.9    
90.1    
90.4    
90.6    
90.8    
91.1    
91.3    
91.5    
91.8    
92.0    
92.2    
92.5    
92.7    
92.9    
93.2    
93.4    
93.6    
93.9    
94.1    
94.4    
94.6    
94.8    
95.1    
95.3    
95.5    
95.8    
96.0    
96.2    
96.5    
96.7    
96.9    
97.2    
97.4    
97.6    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 14632, rend_intergenic: 11920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42191, rend_intergenic: 22087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52706, rend_intergenic: 43393  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59398, rend_intergenic: 52785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72710, rend_intergenic: 59401  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74444, rend_intergenic: 72779  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77728, rend_intergenic: 75345  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84154, rend_intergenic: 78610  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119313, rend_intergenic: 84173  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125934, rend_intergenic: 119722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132628, rend_intergenic: 125937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141587, rend_intergenic: 133951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161671, rend_intergenic: 141645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 168298, rend_intergenic: 164704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179523, rend_intergenic: 169182  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183955, rend_intergenic: 181403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195121, rend_intergenic: 191468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197770, rend_intergenic: 195863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204863, rend_intergenic: 197920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209981, rend_intergenic: 205421  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213050, rend_intergenic: 211051  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 215883, rend_intergenic: 213087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220786, rend_intergenic: 217618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 222974, rend_intergenic: 222007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223527, rend_intergenic: 223238  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 225785, rend_intergenic: 224043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 246788, rend_intergenic: 237730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 243849 - 254104
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support